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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0414300.1

AAGAAAGGGAGATCCACACTAACCGGACAATAATATGTACACCGAGCAGTCCATGATCACACTCACACACACACACACACACCCCACAACACCTTTAGCATCTGTTCCTTTTCTGTTTTTTTTTTCTTCTTTTCCTACACACCAAAAGTCAATCACCAACTAATTCTAAGCCGTTTCTGACGACAAGAAATATCAGATAAATATTCAGATTAGGCTACTACAGCTGCAGATGACAAGACTTCGTCAGGCTGGGAGAGACAGGAAGCCATTCATATCTTCACATCGCAGCTTCTCGTGTCAGTGCTCATTGCTCCCAATTAACCTGCAAACGCGATAGTAATCGATCCATCTCATTATCTCCTCCCTGAAAACATTAATTCTCTAAAATTCGCCTCCATCCATCTGCACTACTGTTTCATGGTGATTTGCATGCAATAATGCCGATCATCAAATGTTCAGAAGTCGATGATCTCGTCAGGTACGTCAGTCATAAACCTCGCCTTCTTCTGCTTCTTGTCGGCGACCTTCTTCTTGTCCGACGAGACGAGCGCCGCCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGGCGGCG

Coding Potentia
Explanation CPC Score
noncoding -1.17995
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0414300.1 8 20699668 T G
Osa08LNT0414300.1 8 20699754 T C
Osa08LNT0414300.1 8 20699789 G A
Osa08LNT0414300.1 8 20699845 T C
Osa08LNT0414300.1 8 20699898 C T
Osa08LNT0414300.1 8 20699912 A G
Osa08LNT0414300.1 8 20699926 A G
Osa08LNT0414300.1 8 20700730 T C
Osa08LNT0414300.1 8 20700896 A G
Osa08LNT0414300.1 8 20701153 T C
Osa08LNT0414300.1 8 20701142 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0414300.1 osa-miR415 Cleavage 5.0 6.168 1 21
Osa08LNT0414300.1 osa-miR529b Cleavage 4.0 6.26 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0414300.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0414300.1 8 Aroma Physiological trait Eating quality RG28 RG1
Osa08LNT0414300.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0414300.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0414300.1 8 QalRr8.1 Resistance or Tolerance Other stress resistance RG28 RM223
Osa08LNT0414300.1 8 QalSr8.1 Resistance or Tolerance Other stress resistance RG28 RM223
Osa08LNT0414300.1 8 qMRLw8 Resistance or Tolerance Other soil stress tolerance RM223 R727
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus