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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0414400.2

TAAAAAAAAGGCATGAATTTTTATATCAAATCAATAAGTTAGCAGTACTATTATCATTTAAATGCACTAGCAAACATGACTAATTAATTGAGCGTAAACTGTTTCCAATCTATGCACACCACGATGAATTGATTGAATTCACATGATACTATATCACATGGTAACGCCGGCTTCATCGCCACTCCCATCGTCGAACAAGGTCCTCTTCCCTGTGCTAGGCGTGTGCCACTTAGGAGTGTCGTCCTGATCTGGCACTGCCAATCCTGCGTCGTCCTTGTCACAACCAGCTCTCCCTATTCTTCGTTTCTTGCACCATGAAAAATCAGGCCATTTTGTGACGCGCAGAATGCGGCCTCCAATCTCGGACACGCCGTCACAGTGGAGCGCACCATTGTAGCTGCTCGCAACATCGTATCTTATGTATGCTTTCCCTGTGCTTGTGCCATCTAGATTCACGGGAGTTACAAGTTTTTTCATATGATCGTTCGCGAAAATTTCTTCAAGTGCGTGCCTAATCGTTCCAATCTCGAGGGATGAATCAAAGCCGGTCACACATACAGTCTGCATTAAATAATTAGGCATTCTCTCCCCACGAGTAGGTATATCTCTGAGAACAGCAAAGTCCTTGGGATCGAACCATGCAAGTTTTAAAGGGCGTCCCATCAGATGATATCCCATAAAATGGTAGAGTGCACTCTCAGCAGCTTGTTCTGTAGAAAAATCAACAACTGCGAGATGCCTCGTGCTACTGAAATAAATACCAACAATCTCACCAATCTCACTTGATTATATTCAACATAATTGGCCATGCCCCAGCTAGCAATCATGGTCTGCTGTGGTACTTTCTCTTGGACTTTGTCTTTTGCGGGTGCTTTCGGCTTCTTGGGGTGGCGATAAGGGCAACCGAAGATGATGTAGCGGCGGAAGTCTCTCGGGGGAGGGCGATGCCGGAGCGGGAGGCGGGGGCTGCTGGCCTCTCCTGCGCTGCAGCTGTAACCCGCCCAATGGTGGCCTGAGGACTCGCTCCCCGCTCGAGTCGTCTTCTCCCCCGTCGCCATTGTTGACGATCCCGATTCTTGTTTATGCGCTGAGCCCTTGGGAGGATTAGACATTAGGGCTTGTTCGTTTAATCCTCGCAAGGAAAAAATTGGAGGGGATTGATAAGAAAAAAATAATTTTCATATCATAATAGATATAAAATAAATTCTCTATAAATCTCCCTCAATCATCTTGTGAGAGGGATTAACTGAAACCGTATGGTGAGACGCCTGTTAGCATATTTCAACATGTACGAATACTAGTCAATAGTTTCAATCTATATTTTTTTTTT

Coding Potentia
Explanation CPC Score
noncoding -1.33969
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0414400.2 8 20802878 C T
Osa08LNT0414400.2 8 20803298 T G
Osa08LNT0414400.2 8 20803384 T C
Osa08LNT0414400.2 8 20803394 G A
Osa08LNT0414400.2 8 20803488 G A
Osa08LNT0414400.2 8 20803531 A G
Osa08LNT0414400.2 8 20804757 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0414400.2 osa-miR5078 Cleavage 5.0 13.559 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0414400.2 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0414400.2 8 Aroma Physiological trait Eating quality RG28 RG1
Osa08LNT0414400.2 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0414400.2 8 nan Physiological trait Source activity R727 R202
Osa08LNT0414400.2 8 qCTS8-2a Resistance or Tolerance Cold tolerance RM223 RM284
Osa08LNT0414400.2 8 qCTS8-2b Resistance or Tolerance Cold tolerance RM223 RM284
Osa08LNT0414400.2 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0414400.2 8 aro8-1 Physiological trait Eating quality RM223 RM80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus