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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0414600.2

CCTCCTTGTTTATTCATCACTCAGCTCATACATCTCAGAGATCATTTTAACATTAGCCTTGTCTTATTGCACGAAAAGTACTCGGTAGTATTATCTGTACCAGCTCCGGGATTTGGCTTTAAAAAACCAAGAGGCGATCGATTACTCGTCTGCCTCCGTCCATGTCGCGATGGCCAGCGTGTGCCTCCCGCCGCAGGCGACGTACCTCGCCTGCCATTGCCCGCCGGAGTCGCCGCCGCTGGTTCCCGGCGGCGGCAGGTCGATGGGGACTTCCATCGGGTGGCCCGTCGTGACCTTCCTGCCGTAGCCCAGACGGCCATGGTCACCTCTACCGTAAGAAAACATTCGTCCATCACGAGTTAGCGCAACTGAATGGGTTCCTCCACATGATACCTGAATAATATCCTCTCCAGCAAGAAGCTCAACCTTTTGGGGAACCATGTGACTACTTTTATCATCTCCAAATCCAAGCCTCCCATGCTCTCCTCTCCCCCAAGCATACACCTCTCCCTCTTTAGTTAATGCAGTTGAATGCCAACCTCCAGCAGCAATGTCAACCAATGAAAGGTCAGATAATCCTTCAACACGGATTGGTTGCGATCTTGGTTGAGTATCTCCAGTGCCCAGTTGACCATACTCATTGTTACCCCATGCCCACAAAATTCCATCTTCTGTTAGAGCCAAATTATGGAATGCACCTACAGCAATCACCTTTACATTCTCAAGGCCTTGCACCCGCACTGGTGTAGATATTTGCTTGATATCGCCTGGAGGCCATGGTTGTCCCCATGTCCAAACATGGCCATCTTGTGTCAAGACGACCGAGTGTGTCCCTCCAGCAGCAACCTACAATTAACGGGAACGATTAGAAAACCCATGCTAAGAAATAAAAGGTGGAAGTGCATGACAAAATATTATCATTATGGAAAAGTGGAGTGCACGACAAAATGTTATAGCATTATTCTGTTACGATAAAAATCCATTTCGGGAGTGCATGACAAAACATTATAGCATTATTCTGTTACGATAAAAATCCATTTTGGGAGTGCATGACAAAACATTATAGCATTATTCTGTTACAATAACAAACCATTTTGGGAGTGCATGACAAAACGTTACAGCATTATTATGTGACAATAACCATTCATTTTGGATATAATACGTTATCACAGTTGCAAAACATATATCCTGGCGACCCTTCAAGCGATTTACGACCTAAGAAATGTGTTCCACAACCTAACACTTGTTGGGCAAGTAGCAGATGCCAAGGTGATAGTGCACAATTTGTTGGATTCCCATTATCCGGTTATCCCCTACAACCATGTTGCCGGACTTTCAGCTTGGGGGCACACCCCTGCGGGATCGGAATGTCCCTCCTGAGAGCCCTGGTTCCATCTTCCTTCCTCTCAGCCTCCTCCCCACACTGCCCATACTCGTTGCCCCCCCAAGCGTATGCTCTCCCCTTGTCGTCCACCGCGAGGCAATGCCATCCGCCGATCGCCGCCTGCACGATGCTGACGCCGGCGAGGGCATCGACGGGGGCCGGGGAGCTCTCCGTCTTGGTCTCCGGCGGGTGCCCGAGCGTGCCGCGCTGGTTCCACCCCCACGTGAAGAGGCGGCCATCGGCGCAGATGGCGAGGGAGTTGCGGCTGCCGGCGACGACGGCGGAGACGGCGAGCGCGTCGAGCGCGGCGACTCCCCGCGCCCAGTCCTCCTCCTCGTAGCCGCCCATGCCCAGCTGCCCGTCCTCCCCCGAACCCCATGCGAGGACGGCCGTGGGGAGGGAGGAAGCCGGTGGGGGCGCCATGGGTGGGAGAGGAGAGGAGGCCGCCGAGCAGGGGCGCGCGGAGGCGGAGGAGGTGCGGGTTTTCGTGCGCCGCGCAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.732633
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0414600.2 8 20821407 T C
Osa08LNT0414600.2 8 20822881 A G
Osa08LNT0414600.2 8 20823653 C T
Osa08LNT0414600.2 8 20824555 A G
Osa08LNT0414600.2 8 20824641 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0414600.2 osa-miR5796 Cleavage 5.0 16.258 1 21
Osa08LNT0414600.2 osa-miR5512b Translation 5.0 9.924 1 21
Osa08LNT0414600.2 osa-miR5512a Translation 5.0 9.924 1 21
Osa08LNT0414600.2 osa-miR5523 Cleavage 4.5 15.322 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0414600.2 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0414600.2 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0414600.2 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0414600.2 8 Aroma Physiological trait Eating quality RG28 RG1
Osa08LNT0414600.2 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0414600.2 8 nan Physiological trait Source activity R727 R202
Osa08LNT0414600.2 8 qCTS8-2a Resistance or Tolerance Cold tolerance RM223 RM284
Osa08LNT0414600.2 8 qCTS8-2b Resistance or Tolerance Cold tolerance RM223 RM284
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus