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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0415200.2

CAACAGAATTAGACCATCGTCATGAATTAATCAAGGTACAAACCAATGGTTGCTGGTACATCAGTAGCAAATGGCTGTAGCACTAGCGTGCCCATATTTATATTCCAAGCCTCCAAGGTATACAATACATATTTGATGTACCGAACAACTGAAAAAGGCGCTTGGTTTGGAAGCGCACTATTTTTAAATTTATAGGATAACTTCTGACAGCCTTTCTTCTAAATGAACTTTTGGCAACCGCTCTGAAGCCGTGTAACACAATCCAACAAAGCAATTTGCAGTCAAAATTTCGGGCATGTGCCGTTCTAGTTAGAATTTAGGATGTGACTCACTAAGTAATTGTGATTGTTTCTCTATGCAAACACCAGCCAACAGTATTGATTTCATCATGCATAATCTGGCATGACCTTCTTGAGGAATTTAATTGGTTGGGATTCCTCAGGCGCAACCTCATCAAAGGGAACATAGTATCTATCCTTGTCGTAAACATGGCATTTAGTCAGTATTGTCTTCATCAAGCGCCAGTTCCAGCTGGCTTCATTGATGTACTTGCCCCAGTTCTGTTTTATGGAATCATAGGCAGCACGAAGGTTATAACTTGGAATTCTTGGAGAAATATGGTGTGGAACATGTACATTTATGTCATGACAAAGTATCTCTATCCACCGAGGATAGTCACAGTGAACTGTGCCGTTTAATTGTGCCTGTGCAGCATTCCACTCTTCTGATGTCTTGAATGGTATATGAGGAGCAGTGTGATGTACCATCGTAAAGGTGCTCATCCAAAAGTGATAAACCATCCATGGCATGAACCAGAACTTGAACCATCCAGCTATTCCTGATTTGAGAATAATCAGTGGCCATCCAATTGCCATGAACGCTAGCACAGATGCTAAGCTTATTTTCACCCTTGGGAGCTCATTTGGTCAGTGAGCAATAGACATCCATGGCCTGATAGGACCATAAGCAAATATCATTGCTTTCCTCAGTAAGGAATTTGTTCTGAACTCCTTTGAAAAAACGGGTTGCCATGCAGTATCTTCTATCAACATGTTTGTCTTGGCATGATGTCTGTCATGCTTAAATCTCCAAGGTTCATAGGGGTATATCAATGGCAAGAAAGCTAGAGTTCCAACAATATCTTCCACCAGCTTATTCCTCGAAAATGATTTGTGGGCACAATCATGACCTATGACAAAGAACCCCGTAACTGCTGTACCAGTCCATGCCCAGGCTAAGGGAAGAAGATACCAGGGAGCTTTTGATATCAAGAAAATACCAAGAGCATAAGAAGTAACTGATATTAAAACAGAAGTCCAAGATTTTAGATCATCGATTTCAAATACCTCTTTAGGCAGACTATCCATTACATCTTTAAGAGTAACATTATCTGGCAACTGTTCTCCAATTTGTTTGAATCCATAATCTTCACACATTTGCTTCCGTTTTTCTTCATCATCTAACAAAGGTGGAGTAACAGGCAGAACTGCTGCTTGCAACCTTCCGCTTTGTTTCAATGGTAAAAATTGATGACAACTCTGTCCTTTATATACAGAATCTCTCTTCAAAAAAAATGTACCTGGTGAAACATGATAATGTAACATCTAAAGTGCTGAACGGTATTGCCAAATAAGCACGACAGTAATTTAATCAATAGTTTTCATTGCGATATACACCAATGAACACACTAATAAGTAATCGTTTCCATTAT

Coding Potentia
Explanation CPC Score
noncoding -1.13928
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0415200.2 8 21451054 A G
Osa08LNT0415200.2 8 21451820 T G
Osa08LNT0415200.2 8 21452226 T C
Osa08LNT0415200.2 8 21453310 A G
Osa08LNT0415200.2 8 21453813 A G
Osa08LNT0415200.2 8 21454200 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0415200.2 osa-miR6247 Cleavage 5.0 20.226 1 21
Osa08LNT0415200.2 osa-miR397b Translation 4.5 17.398 1 21
Osa08LNT0415200.2 osa-miR166l-5p Translation 4.5 13.009 1 21
Osa08LNT0415200.2 osa-miR172a Translation 5.0 19.406 1 21
Osa08LNT0415200.2 osa-miR172d-3p Translation 5.0 19.406 1 21
Osa08LNT0415200.2 osa-miR2055 Cleavage 5.0 23.207 1 21
Osa08LNT0415200.2 osa-miR2094-3p Translation 5.0 19.281 1 22
Osa08LNT0415200.2 osa-miR2873b Translation 4.0 12.86 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0415200.2 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0415200.2 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0415200.2 8 Aroma Physiological trait Eating quality RG28 RG1
Osa08LNT0415200.2 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0415200.2 8 nan Physiological trait Source activity R727 R202
Osa08LNT0415200.2 8 qPN-8 Morphological trait Seed RM223 RM80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus