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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0415400.1

ACAATTCAACAGGAAATATCTATTAGCTTCATTGTACTCTGATACAGTAGAGGGTACAAGTTATGATACACTTTGGATGTGATAACTAAGTTAATGGGGAAGAATGGGGATCAGAAACATTTAGAGTGAAACCTAAATAATTGAATCACATTATCTATGAGAACTGTAACCTACAAGGGAAAAAAAATACCTAAGCAAAATTGAATTGCCAATCGCTAAAATTCTCTGAATATTGGTACAGTGCAGCACGTAGAGTTCAGGGACTAGACGATAAAATTATCCATCATGTGATTGATAACGTCCGCGCCGTCTGAGTTTAGCCAATAGCTCTTCACCTGGATGGTGTTATGCGCAACCAATCTTTGACTACTTTTCTGGAAGCTCACATCAACACGTTCCCACGGTACTTGTGTAAGGCCTCTAATCATCTCCTCTTCTGGGTCATAAAGATCAGAACGAGCTTCTGCTTCATTACTGTTCGTTGCTCCTTTATCAACATGGACAATATGAGGATATTTCTCATCACGAACAAGAAGTCGATGTTTTGGTAGCTCATGTTGGCGACGGATTGATGACGTTCTCCACCCAACCATATGGTCGAAGTTTGCATTAGCATATGCCACACGTCGTTTGAAAGAGCGCAACGCTGATCTGAATTTTATATCATCACAGTCATCAACCATTTGAAGGAGGAGTGGGCGTCTGCCATCATCATTGTCTGTAAGGAATAAATGCTTTCCTGTTCTCCCAACAAGCAAATGTGCAGTTTCCGAAGCTCTTCTTTCCAGGAAAGGCAGGCCACATAAGAAAGGGAGCTGGTGGAAGAATCTGTTTATTTCCACTTGAACCAAGATGCGGTGAGGCAAAGGTTATAAAATTCATAGGTTCTAAGCCAGCAATGAAACCCTCCAAGCGCTCACCTTCATCTCTGCTCTTCTCCGAAGAAGATTTAGTTTTGTTATTTGGTTCATAAAGCCTCCCTATAGCATATCTAGCAACAAGGCCACCTAGAGAGTGTGCCACAAATGAGATCTTCTTCACACCTCTTCTTTGTTCTACAACTGATAAAACCTCATTTGCCAACCTTTCACCCATCAGGTCAACTCCGTCAAATGTTTGTGTAGCCGAATTGCACTGGCTTCGGTGCACGATCACTTTTTCCGGCATCCGCCTCACGAACTGCTCCGCCGCGAATTTCCAGTCATCCGCGCTCCCGACGAGGCCATTGACCATGACGACGAGGTGCTCGGGGAAACCCCCGCCCTGCGCCACCTCGGCCTCCGCCTGCGCGCTCCACACGTCCTCCCCTCCGCCCCGCGCAGGCTCCTTCTCCACCTCCGGCCGCTTCCCCTTCGCCTCCTTCACCGCCGCCGGTGGCGCCGGGCGGAAGCAGCCTATCCACCGCGCGCCGCCGCTGGCCGCGGGCGCCGGGGAGCGGAACGCGAGGCGGAGGCGCGCGACGGCGCGGGGCCACCGCGAATGGGCCCCGTGGGCTGGAGTGGCGGTGGCGCGGCCCATCGAGGCGGCGCCGGCGGCGATCATCCGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.884682
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0415400.1 8 21842524 G C
Osa08LNT0415400.1 8 21842555 A C
Osa08LNT0415400.1 8 21844063 C T
Osa08LNT0415400.1 8 21844410 T G
Osa08LNT0415400.1 8 21844609 G A
Osa08LNT0415400.1 8 21844972 C T
Osa08LNT0415400.1 8 21845302 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0415400.1 osa-miR5808 Cleavage 4.0 14.6 1 24
Osa08LNT0415400.1 osa-miR319a-5p Translation 3.5 22.687 1 21
Osa08LNT0415400.1 osa-miR1441 Cleavage 3.5 18.747 1 21
Osa08LNT0415400.1 osa-miR1320-5p Translation 4.0 19.444 1 21
Osa08LNT0415400.1 osa-miR5491 Cleavage 4.0 19.079 1 21
Osa08LNT0415400.1 osa-miR2275d Cleavage 4.5 18.232 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0415400.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0415400.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0415400.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0415400.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0415400.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus