\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0416000.1

ATTTTTCATGATTACATATCCATATGCCATGTTTGGTGTTGATAATTCACCAGTTCCTTATATAGTTTTACATGAAAATCTTTAGGAAGGTCGGAAACAACAGTGCAAGCATGACTTCCTATCGATTGTTGTGCAACGTTGATGATGTTTTGTAGCTCATGATGTGATTTATGGCTGATTAGTACTTTTGCTGCTACATATTTTGTCAAAATACATGCCATTAGATTGGTGTCCAGTGAATTTATTAGGTTGTGTGACCAGTGCAGATAAATTTGAAGTGTGTACTCTTTTCTAAAGTGAACAGCGCATGTTGCAGCCTTCAGTGATCCAAACATCTAAATCAGTGAGTTTCAGCTGTCTCTTTTACTTCTGAGCATGATGAAGGGCTTTAATTATATTACCCTCTTATTATCCAGATATAGTAATATGATATGTCTAAGCCATCTATCTTCCTTCTTTGTATGAAGGGCATGCGGTACATTCATGTGTTCTTGAAAAAGTGTAAACATATCAATTCTGAAATTTCAGGGAAACCTCCATAGATTTGATTTTGGTCAGTTTGTAAATAGCGGTAATGCTCAATCTCTGATTTAGACTTTAGAACAGGAACTATTTCCTAATCAATAATGCTCAACTCCCTACGTACATCTAATATTTTACTTTACAAGGCTCAACTATTTTTTCTGTTTTATGGGAAGACGAAATACCCTGGTACGGTTTTAAATTAGACATGTAATTTTACACTGAACATCTCTGCTCTACCAACATAGTTAAAATTTTGTCAAATTACTTTCACCTCACTGCAAAAGTGGAGGAAAAGGCTACAAGACATGTGTGGCCTACCAGTAGAAGCAGTACCAAAAAGGCCATTGAGTTGAAGGTATTATAAATTTTTCAGTCTTCTTCACATCAATTATCCGAATGGCATTATTTCATAGATCATGATATATGGTATGAGATTAGGAGCAGAAGTTGACTCTGGTGATGCAGCAGCTACTGGGTCCCAACGGGGATGCTTAACAATTGAATATCTTATAATGAATCATGTAATTTTTAATGTCTGCAGTTTTACAAGAACCTCTCTAACACCTTAAAGGATGTTGTTTAGAAATCAGACAATCCTCAAAGTCAACCTTCCTAGAGTAACTTGGGAGAATAGGGATGGGTGAACTACCATCTTATTCTTTTGAATCAATGTTCCTGTTTTTAGAGGCTAGAAAAGGAGAAAGGATGTTTATTGCACTTGTAACTAGATGTGAATGGCCCTGTAAACTATGTTTGGTCTCCAC

Coding Potentia
Explanation CPC Score
noncoding -1.27515
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0416000.1 8 22152886 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0416000.1 osa-miR6254 Translation 5.0 17.115 1 21
Osa08LNT0416000.1 osa-miR3981-5p Cleavage 3.5 17.26 1 21
Osa08LNT0416000.1 osa-miR5161 Cleavage 5.0 16.938 1 20
Osa08LNT0416000.1 osa-miR5503 Cleavage 4.5 17.94 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0416000.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0416000.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0416000.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0416000.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0416000.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus