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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0416400.1

GGGGTAATGAGATAATCCATTAATCAGGAAACGATAAACCGAGCATATGTATTGCTCCCAAGTAGAAGCAACTAGTATGTAGATCAGCAATACAGTATACTCCAGGGTGACAGAAAACAGAATAACATCAGGGTTCAGGAAGAAATAAAAGATACAGGTTACTAGAATATACTAGTATAATCACAAAAGACAGCGAGTGCACCTACGACTAGCAAGCATGGTCTGCTCCAGATCTGCACGGCACTGACAGAACCATGGACGATGGGATGAGAGTCTGTCGCCTCCCGATCCCAGACATGGCCCTCTGGAGAATCAGCATTAACATTGGCAACATGGTTGACGATATGGCCCTCTTCAGAATACACATGTGCATTGCCAACACCGTTACTGACAGGATCAGTAATGTCTCCTTGTCTGAGCATGGCCTTTAACATCAAAAGTTGTATAAGACTTGAATTTAAGATGGGTTGATGAGGAGCTGTTAGCTCTGGAAACTCAGGACAGTCAATGCCACATTCTTTAGATAGAGCCGCATTTCCATCAGCCAGTAATAATCATTTGCTTGTAGGACATATAAAGTTAAGGTCAGTAAAGCTACCATGTTTAGTACCATTATCTTAGCAATGAACCACAGACGTGAGACATCCATGATAGATGACTCATCTGGTGGAGCTGTTCTTCTAGCTTTATCATCACCTCAAACTCCTCCAGTTGTGCCACAGACTCTATGGTCCAGCCGCCGCCGAGGCGCCGACTCCTATGGTCTATGGCTTACTGTCATTGCTCAATCCACTGCTTGTTCATGTCTCCTCCACCTCATTCCTCAGTGGATGTATCCATGATGGCGTTGCATTTCATTCAATAAAGATTCTGATTCTCTACCCATGAAGATGATCTCAGCATCAGATGAAGTTCTCGGATATTCTGCTATATCAATAACTGCCTCCTCATTACTGCATATAGCGTAGAATGAAAGACGAACATATAGCTTTCTTAGCAGTCTTGCTTTAGAAAGAACAAACTCCATAAAGTGCATTTCATTACGAACACATGCAATATTCTTCAGTTGCACAACATGAAGTTTCACAAACATATCATCAGTCAACTGAGCATTCAAGAATTTGTCGTTTGCTTCAAATTCCTTAGCTCCTTCAGTGCATCCCCAAACATCAAGTTCTTCAATAAATGGGGAACTTCTAAAAGGCAGAAAATCGCTAGCATGTGGGACATTTTAAAAAAAATTCACAGCCAGGGATAAATTCTTAAGGTTCTTAAACAAGAACGGTAATCTCTCCAGCACATCAACTTCAGTTGACAACATGCAGTTGCAGAAGAAATCGAGCTTGGTCACCTGCGACATTCCTGCCAAGAACTTTGCGCAATTGGGACCAAACAATCTCCCTTCGTCCAGTCGTGGGAGATCCTCCACTCGGCCACCAAAAGCAGTTTCACACACCATTGTCAGATTACGCAGATTGGGCGCCCGAATAACCCACTCCTCGTCAGGGCCATCCCCAATGAGCTTCACGGCCAAGAGCCCCAAATCCTCGAGCAATGGCGACGCGGCTATCAGCGCCGCCACTTCCTTCCCCCCGTGCCTCGGGACGTCAACATCCTCGAGGCGTAAGGTCTTGATATTGGGGAATCCGGCGAACCCCGAGGGCGCCGGTGGGAGGCGGCAGGAGTTGAGGGCGAGCGAGGTGAACTCCCCGCAGGAGAAGAGGCATGGGTGGAGCCGGAAGCGGAGCTCCGGGAACGAGAGGTCCAGGGCCTGGACGCCGCTCCGGGAGAGGTAGAGGAGCCAGTGGTGCAGGGCGTCGACGGACCAGGTGCCCTTGCGCGCGCGCGCGACGAGGCGGAAGGTGCGGAGCGCGGCGGGGCGGCGGAGGAGGATCGCGTCGACGTCGGGCTCCGAGATCCCCGGGCTGCGGGCGAGGTCGACGGAGGGGAGCGCCGCCCAGCGGCGGCGCCACGCGCGGGAGAGCGCGGAGGTGCGGACCACCTCGTAGATGTGATGTGGAGGCGGGAGAGGATGTTGTCGAGGACGTCGAGGGGGAGCGAGAATAGTGCGTCCGGCGGCGATTCTGCCGCCGCCTCCGCCGCTTGCCGCGGCCTCCGGCGGCGC

Coding Potentia
Explanation CPC Score
noncoding -1.06401
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0416400.1 osa-miR1847.2 Cleavage 4.5 14.103 1 24
Osa08LNT0416400.1 osa-miR1855 Translation 4.5 10.71 1 21
Osa08LNT0416400.1 osa-miR2092-5p Translation 4.5 15.677 1 21
Osa08LNT0416400.1 osa-miR2118d Cleavage 5.0 24.468 1 22
Osa08LNT0416400.1 osa-miR2118f Cleavage 4.5 24.468 1 22
Osa08LNT0416400.1 osa-miR2118h Cleavage 5.0 24.468 1 22
Osa08LNT0416400.1 osa-miR2118j Cleavage 4.5 24.468 1 22
Osa08LNT0416400.1 osa-miR2118k Cleavage 5.0 24.468 1 22
Osa08LNT0416400.1 osa-miR2118m Cleavage 4.5 24.468 1 22
Osa08LNT0416400.1 osa-miR2118o Cleavage 5.0 24.468 1 22
Osa08LNT0416400.1 osa-miR3979-5p Cleavage 4.5 24.129 1 20
Osa08LNT0416400.1 osa-miR5489 Cleavage 4.5 16.251 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0416400.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0416400.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0416400.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0416400.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0416400.1 8 nan Physiological trait Source activity R727 R202
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus