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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0417100.1

CCCTGCCATTGCTGCATCGTCCTCAGGGTTCATATGCTCAATACGGAAGAGGGTCTGGCAGGCCAATAATCTTTGCATGGATCGAAAAGTCAGAATTTAACTGTTCTTTCAAAAAAGATCAGTTCACTGTTGTATAGTAAATCCCTACTCCGGGTATAATTTTATTTCATAACTAGCATTGTTGCAACTTAGTTTATAGAACTAACAGTTGTAGCTTAATTTATTCTAATCTGATCTCATGTCTGGCGATGTGTTGGTAATTGATTAGTCCTTCTTAGGGTCTGGAATGAAAATGCTGATGTTTCTGTTGTTCACCTTCTGAAGGGGCCTTGCGTTGTTCTCATAACCGTCAGCCACGGCTTCCCTGAGAAGATCAAGCTGATACTGTGCCACAGTCTGGGCCCTCTTGAAAACCGTCCAGATCACTCCCTCCGTGCAAGGCGGTGTCGTGAGGGAGCCCATGTAACGATAGTACACGGCGTCTGGGCTCTTGGCTAGCTGTGGATCCACCACACCGATCGGCTCTGACTTATCTTTTGTATCTGCTATCCTTCTAATGAATGGCTCCAGCATGAGCAGGAAGGGGTCGGGGTTGCCGATTTGGTAGAGATTGCCGATCACCGCCGTGTTGCTGTTGCCGTCGTCGTGTACAAGGTGCAGCTCCATGTCATACCTGCGGCCGTTGACGGTGTGCTCGGAGGGCGTGTGCCAGTGCAGCTGCTTGAGCTTGTACGCCTTGCCGTTGATCACCACTCTCCCGGCGTTTCCCATAAACTTCACCTCGATGTCATGGCCGCGGTTGACCATGGAGGCCTCGGCTGGGAGGTAGGAGTAGTCGAGGTAGCCGAGGTTGCGCATCAGGCGTTCGTGGGAGAGGTCGATGGGCGACTGCATGTTGCCCGTGTTGCACTTGGCCCATCTCGGATCGAGCCTACTCCAGTTCCCCGGCCCGTTTTCCGTGCCGGGGACGTAACCAAACTTCCTTTCATCGTCGGTTTCCTGAGCTCTGGCCGCCGGAGCAGCCGAGAGCAGGAGTACGGCGGCAGCGAGGAGGAGGCGAGCTCGAGTACTCGAATGCATGTTTGGGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.768454
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0417100.1 8 23148203 T C
Osa08LNT0417100.1 8 23150336 A G
Osa08LNT0417100.1 8 23150706 A G
Osa08LNT0417100.1 8 23150958 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0417100.1 osa-miR5525 Cleavage 4.5 15.505 1 22
Osa08LNT0417100.1 osa-miR172a Translation 4.5 15.505 1 21
Osa08LNT0417100.1 osa-miR172b Translation 4.5 15.505 1 21
Osa08LNT0417100.1 osa-miR172c Translation 3.5 15.505 1 21
Osa08LNT0417100.1 osa-miR172d-3p Translation 4.5 15.505 1 21
Osa08LNT0417100.1 osa-miR812k Cleavage 4.5 11.965 1 24
Osa08LNT0417100.1 osa-miR812l Cleavage 4.5 11.965 1 24
Osa08LNT0417100.1 osa-miR812m Cleavage 4.5 11.965 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0417100.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0417100.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0417100.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0417100.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0417100.1 8 qPN-8 Morphological trait Seed RM223 RM80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus