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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0417300.1

ATGTCAAAATTCAGAGAGATCTGGTTATTGCTAATAGAGCTGTTTCATCACAGCAAAGAGATGCCGACAATAGAGTGGTACTCTTTGGACATGTGAATAGTGTTACATGTACGACGCTACTGAAGCTGGGTTTATGCAGAGTTCTTATCGCCACCAAAGGCGTTTTCCAGAACACCGGTTTCCTTAAGGTGGCTGATGTCCCCGCACGCCTTGACAATGCAACGCCCAGTGGCACCAGACACAAGGATTACGCTTACGGATGTGTTGTGTATCTTACCGTGAAGAGGCTTCATTGGACTGGCATGCCTGTAGAGTTCTCTGATGGTTCCACCGTGCGAGACCAAGATTATTCGCTCCCCTTGATGTTTCTCGACTATGTTGTACAAGCAAGAGACACATCGCTCTGATAGTTGATCAAGACTTTCTCCACCACCAGGAATTTGTCGGTTCCTCTTGTGCGACAAAAATGCTCTGTAAGCCTCTGGCTTTTCTTTGCCAGCATCTTCATACTTTAAGCCCTGCAGATCTCCGATGTGTCTCTCTCTCAGTGCTGGATCAAACACAACATTTGGCAAACTGCAAGCTTTTGCTATTATTTCTGCAGTCTCTGCCGCTCGCTTCAGATCAGATGAATATATCGCAGCTGGCTTGGCTTCATTAGAAAGACGCCGTGCAACCGCAACAGCTTGTTGTCTTCCAATCTCATTCAGTTCTACATCCAGGTGCCCCTAATACAGGATTTTGGTTCTATATCAGTTGAAAGGCAGTAAGAAACTATAAGTGTGATAAAATAAACTTATGAATAAGACATGGTTAGTTAATGCGCAAAGACAAGGTAATGTTGGTAATCATATCATGAAATGCCTTTACCATACTTTGTTTCCATATTACACATCAGATATAGTCAGGTAATGTGTAACCATAGCTATCTGACAATCCACTATGGCGAGTCATAGCATAAGTTTATCGACAGCCATAAAACCTTACTGCCTATCATCTCTTAAGTTTTTGCATTGCATAACTTCTGTTATAGAAACTGTTCCTTACAACAGCAGATGTACGAGGGAATTTTCCTAGTACTTTAGTAAACAACTACGAGTTCAGACCATGTGATGAAGCACATATTGCAAACTGTAAATTTCTATAAAAGGAATAAGGGAATTGCATTACTTTAACATTTAACATTTTTCACTTCAACTTTATAAACTTTATTATACGAGAAAATCATATCAATCCATTAAGATTAGGGGAGTGAATAAACAGTCACTGGAACAATTTAATTAGGGGAGTACCACATTAAGGGTTTCATGCTGAAAACAAAAGAAAAACAAGACCTCTTATGTAACGGGTGCAATCAATCAATCAAAATCCGTTCAGCAAATTAAAAGAACTTTCTAAATACCAACATACTTTCATCAAATTCTGCATGGCATCACTTGAGAAAACATCCATTTTGTCCGACTTGTGAGCCCTTGTATACGATATATCGTCCTTATCAAGACACGTTCTTTGTCAAACTATTTTGGCTTAGATTAGATAGTAAAGCCAACTAGTCTGTATTACTCCGGAGCATTGTCTAAGGTACACCGGAGCATTGTAAAGTCTGAGCACTGAATGATCAAAGAACTAGAAACAAGTGTACCACCAAACTATCATTTATTCTTCCCAATTTTCCCAACCAAAGCTTTTCCCCAAAGTTGAAGACCAAAGCTTCAGAGAAATAGATGGGGCTCGGGGCGGGAGGAACAGAGCACGGAACCTGGATGATGCGCGAGGCGTTCCAGGCGGTCTCCCCGTGCCGCACCACCACGACCTCGGTGAACTCCCCAGCCTCGCTCTCCCTCTCCCTCTCCGCCACGGACGCGGACGACATCCCTACCGCTGCCCCCGGGTGGTGCCCGTCGTTCCGGCGGATCTGCCGGGCGACGGCGGCGGCGGGGCCGGCGGGAGCGAGGGACGCGGAGGCGCCCGGTGGCGGTGGTAGTAGCGAGGTGAGGACGGCGGCGATGGCGGCGCGCGGCGGAGGAGGCAGGCACGTGGGCATGCCAAGGAGGAGCGGAGGCGGCGGAGGCGGCGGGGAGAGGCCGGCC

Coding Potentia
Explanation CPC Score
noncoding -1.2054
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0417300.1 8 23469166 A G
Osa08LNT0417300.1 8 23470021 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0417300.1 osa-miR5530 Cleavage 5.0 14.316 1 21
Osa08LNT0417300.1 osa-miR5831 Translation 4.5 18.621 1 24
Osa08LNT0417300.1 osa-miR6256 Translation 5.0 23.24 1 22
Osa08LNT0417300.1 osa-miR7692-3p Cleavage 5.0 17.421 1 24
Osa08LNT0417300.1 osa-miR437 Translation 4.0 14.157 1 21
Osa08LNT0417300.1 osa-miR395w Translation 5.0 14.66 1 22
Osa08LNT0417300.1 osa-miR1425-3p Cleavage 5.0 12.351 1 21
Osa08LNT0417300.1 osa-miR1850.2 Translation 4.0 13.578 1 21
Osa08LNT0417300.1 osa-miR1879 Cleavage 4.0 13.673 1 24
Osa08LNT0417300.1 osa-miR2118p Cleavage 5.0 21.378 1 22
Osa08LNT0417300.1 osa-miR528-3p Cleavage 4.0 24.203 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0417300.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0417300.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0417300.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0417300.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0417300.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus