\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0417400.1

CACTCGCAAAGACAAATTCAGTTCAGTAGGCACATTATAGTACATCATCATTTTATGAATACATACAAGGAAAAAGAATTAGAAAACAGACAGTACAACAACCACGGCACAACTAATAATCAACCTGTTAGACAAGATACCTGTGTTACAAGTAGCCAGTAAGTATGGAAGACTGACAGCATAGATGAGCAAAAATCTTTGAGGGACTCATGCTTTTCATCTGGCATTGAAAATAGCAATCTGAGTTTAAGGTCGAACCATTATCATGTTGCATCCAGAATGCCCTTAAAATGGTTAGCCAAGGCATATGTTAGGATCATCTTCATCTGAGTCAAACTCCACATTTTCATCCCTGTACCATCTTCCATGGCCATCTCGTTTCCATCCTGAAGCAGTGAATTTGAGTTCTTGCTCCTGGCGTTTTTGGAAATCTGCTTGCTCCTCTGCAAGCATTTTGGTTGCAGTTCTGTCACCAGCAAAGATTTTTCCTTTCACAGTATCTCCACTCCATTTTTCCATTGGAACACTAGGAGTAACTTGGGAATCACACAGTGAAGAATTTGATGTCCTCTCCAGATCATGAGATTTCTTGTTGGCGCTGTCGATGATAAATCTGCTGGACTGTGCTTCCAAAATAGCTTGTCTTGTCTGCTGAATCAATGGTTTTTCTTTCATATCACTAGACCTAACACCATAATGTTGCTTACCAGAACTTGAAACGGAAGCTTCTGGAGAAATAGCAAGTCTCTTGTTGATCTCTTGTTGTCTTGATAATTCTTTCTCCCTCAGCCTCGATTCTGGGAGAGCATGAGGGGGGAGTCGAGGACGGGGCGGTGGGGGCAGACGAGGCAGGCGAACTTGCCGTTGGAGAGCCTCCTGAACGAATCGGGCGAGGACGAGGATGGGGACACTGCCGAGGCGGGGAGCATGAGGTCGTCGAGGCGGCGCTTCCGCTGCCGCGCGTCGCGCGCCCAGCTGTCGCCGCCGAACACGCTCATCTCGGCGTTCGCGTCGCCGCCGCCGCCGCCGCCGCAGTCGCCGCCGGGAACCAGGAGGAGGGGAACTCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.942168
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0417400.1 8 23553045 T C
Osa08LNT0417400.1 8 23554001 G A
Osa08LNT0417400.1 8 23554012 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0417400.1 osa-miR5790 Cleavage 5.0 12.398 1 24
Osa08LNT0417400.1 osa-miR5516b Cleavage 5.0 14.226 1 21
Osa08LNT0417400.1 osa-miR3980a-5p Translation 5.0 19.287 1 21
Osa08LNT0417400.1 osa-miR3980b-5p Translation 5.0 19.287 1 21
Osa08LNT0417400.1 osa-miR5516a Cleavage 5.0 14.226 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0417400.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0417400.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0417400.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0417400.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0417400.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus