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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0417800.1

GAAAGATATTTCAGGTAGCGTGTCCACGAAAATCGAGAGTTCTTCAAGGGTAAATCAAAACTCAGTGTAAACTGCAAAAAAAGAATTAGGAGGTGTTTGGGAGATCTCTCCAAAAAATAAGTCGAGGGACTAAACTAACACTTCCTTAGGTAGTGTTTGAATCTTCTGAAGATGAAGATTAAGTATTTCACGTAAAACGAGGTGGTAATAACGTGTGATTAATCGAGTTTTAATTATTATAAACTCGAAAATGGATTAATCTGATATTTTAGAACAACTTTTATATAAAAAGTTTTCGTACGAAACACACTGTTTAGCTGTTTGAAAAGCGTGCCACGAAAATTCAAAATTTAATCCACTTCTTACAGTGGAAACGAACAGGACTAGTCAATCAATTAAAAGATACTCACATGATGATATAAGCCTCTTTCTAAACTAAAATCAAACCCATCACCTTTGTTTTTTCCATCCAATATTCTGCAAAAAAAAAAATTTTGTTTGTGCCAAATCGGATTTTTTTTATTGATATTTTAGATGGTTTTGCAAAAAAAAATTCACAAACAAAAGAACTTGTGAGAGGAACTACACTCTTGTGGCCAGGAAAGGAGGGCAAGTGTGGCAAGGCTTTTTGCGTAGACACACTAGGCAGACGCCAGGAATCGCTGTCAGCGACAAGTCTGCTTTTCACGTGGCGCCGGGCCCACCGACAGCGACACTGTTCCCTCCAGCGCTGCCGCCGTTGCCTTCCTCCACACTACGGAGTACACTACTGTCACTTTTTTCTCTCCCGCTACTTTTGCGGAATTTCCCCTGCGTTTCCCACGAATCTCCCTTGGCTCCCCTTTCTGCATCGTTCGCTGCTTGAGCCAGAGAAAGCCAGGAGTGCCATTTCTAGCTCACCGGCCACGTGGCCCACGTACTAGAGGGGGAGGATTTTGACAAAAAAGGACTAGGTACAATTTCATTTTACAAAAATTTGCAGAAAACCCCCTACGGAATTGTTTATTCGCCCCAGCCAAGTAAGCAAAGTTTTCGCGGCTAGCTAGGTCGTCCATTGCTCGGTGGGCTCGGCCCACCACGGCAGCGACGGGAGATGCTCGTCGGCGAAGAAGCCGCCGCACGCCGCGCCGTCGTCGCCTAGGAACGCCGCCTCGTCGTCGTCCACCTTGAGAAGCTGCCCGTGGAAGAACACCTCGGCGTGGTGGAGCAGCGCGGCGCCGGTCACCACCGCCTCCGTCTCCTCCGAGGCCGCGGCGTCGGCGGCGGCCGCCGGCGCTGGCTTGTGTGGAAGGATCTCCGCGTCGTTCAGCACCGCGCTCGAGTCGCTCTCGGACGAGCCCTGCGGCGCGCCGGTGGCCGGGGGGTCGGCGTCGGACGCCGCCGGGTCCTCCTCCTCCTTCACCGACGAGAAGCTCGCCGCGGCGTCCTCGTCGCCGAGCTTCCCCTTCAGCTCCTTGATCTCGGCGAGGAGGGCGTCCTTGTCGCGGCGAAGCGCGTCGTGGTCGGCGCGGAGCGCGTCGTAGGATTGGCGGAGCGCGGCGTAGTCGCGCTCGAGCTGCTTGGTCTTCCACCGCGCGCGGCGGTTCTGGAACCAGACGGCGACCTGGCGCGGCTGCAGCCCGAGGTCGCGCGCCAGCCGCGCCTTCCGCTCCGGCTCCAGCTTGTTCTCCGTCTCGAAGCTCCGCTCCAGCGCGCGCACCTGCTCCACGCTCAGCCGCCGCTTCTTCTCCCCGCCGCCGCCGCCGCGGCCGCCGCACATCGCCATGTCCTCGTCCACATCCATCTCCTCCTCCACCCCAACACCACCACCACCTTTCACAACCAAACACACACTCCCATCTCAACCAAGATCTCCAATCACCACACAAAACCACCAACCAAAAAAAACTTACCATCTGCAACCACCGGGAGAAGCGCTGCTGGACTTCTCATGCTTCAATCCCTACTGTCTCACGACGTGAAATTCACAAAAGATTCGAAGAGTAGCGGGAGGAGGACGACGTTGTCACAAAGATCAAATGGAAGAAGCAGAGAAAGGCGTGATGATCAGGAGGAGAGGGGTGGCCGGGGGAAGGGTAATGGGGAGAGGTGGGGTTGCTCGGTGCTGTGCCTCCGGTGATGGCACTTGGCGTCGTCGGTGTGGCCGCCCGTCTTGTGACCCAGGACCATCGGCACCATGGTTGTCGCCTTCCTCCCCCAAGCTCCGATCCGTCCAAAGACGACGAGCGTCTCCTACAACCGAGAGACGCCGCTAGAGGAGGAGGAGGCGACGTTCTTGAGGCTTCGCATGATCCCTGTGGCACGCGTGTGCGGAGTGTACTGGACTGGACTGGAGTGTGGTGGAGTCGAGTACTGGAGTGGGAGGAGTGAAGTGGTTGGGCTGGGCGGGGGGTTTTCCGTTTTCTTTTTCTTGCCTCTCTGTTTTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.590016
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0417800.1 8 23803320 T C
Osa08LNT0417800.1 8 23803278 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0417800.1 osa-miR5819 Translation 4.0 10.849 1 21
Osa08LNT0417800.1 osa-miR2873c Cleavage 4.5 8.106 1 21
Osa08LNT0417800.1 osa-miR169i-5p.2 Cleavage 4.0 17.34 1 22
Osa08LNT0417800.1 osa-miR1879 Translation 5.0 0.809 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0417800.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0417800.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0417800.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0417800.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0417800.1 8 nan Physiological trait Source activity R727 R202
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus