\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0418200.1

ACCAGTACCAACCATTCTATTTTGTACCAGTCTATGAAATTTCACAGCTCAACAGTCTCAATAGTCAATGCTAACTCTACTTTAGTTTCGAGCACCAGCCACAACACCACCATGCGTCACAATAAGCATGGTATAACTCATACAGAAAGGTACACATATGTACAACGAATCATTCAAAAAAAAAAGCATATGCTATACACAATGGGGAGCTGAGAGTATTTCCTTCTACGTAGGGCTAGTGATTATATATTTGCATTTACTCCATCATTTGATGTTGAGTCTTCGAATTCCTTCTCAATCTCCGTGAAGATAGGTTCTACTTTAGCATCAATCTTGTCGCTGAAATTCTCAATCTTCTCAGTAATGGCCTCAACCTTCTCTGCATCTTCATCCACTACCTCAGCTATGTATTCAATCTTCTCCACTACTTTCTGCAGACATCCATTCTCTGGAAGGTGATCAGCCACGTTAGAAGCCAGTTTCTCTGTGACCTCAGCTATTTGCTCCACAACCTCAGCAGCAGTCTCCACATTTCGAGCCGTCTCATCTTCAACATACCGTGCTCTCTCGTAGAATGGCACCACTGTGTGCAGCACACCTCCAATCACCCACCGAGCCCATGTAGGAATTGTCTTCGGAGATGAGCGCAGGCTCTGGGCTGCCAAATCCGCCGGGACGATATCCGACTTCCCAAGAACAACCCAGCCCGAGTCGATGTCACTCAAATCGGCACCACCCTCCGCAGGCTTCTCTCCCCTGCTTGTGCCTTCTTGCTTAGTAGACGGTAGGGGACCGATCGGCTGCATGGTGAGAGTCGCCATGGATTGGAAATCGCGAATCGATTGGAGAAGAGAAGCTCGAATGGATTGGGGACGGGGA

Coding Potentia
Explanation CPC Score
noncoding -1.06946
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0418200.1 8 23884576 T G
Osa08LNT0418200.1 8 23885474 A G
Osa08LNT0418200.1 8 23883926 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0418200.1 osa-miR528-5p Translation 5.0 10.254 1 21
Osa08LNT0418200.1 osa-miR528-5p Cleavage 5.0 18.666 1 21
Osa08LNT0418200.1 osa-miR2097-5p Translation 5.0 19.427 1 22
Osa08LNT0418200.1 osa-miR5510 Translation 5.0 16.517 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0418200.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0418200.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0418200.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0418200.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0418200.1 8 qPN-8 Morphological trait Seed RM223 RM80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus