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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0418300.1

GCTGTCCAAAACGACTTCCTTTACGAATACTGCGTGAGTATGAGTTAAACCACCACACTATACCAAAGGTAACTCTCAGAAATAGCACAAGCTAGTTTTATCACATAGCTAGTTTTGGAGACCATGTCACTGTCCAAAACAACTTTCTTTCCTAATACGGAGCGAGTATGAGTTAAACCACCACACTATACCATCACCCGTGTCAGCTCCGTTTTGCTGTCCTCACGACTTCTTGATCATCCATCTCAATGTGACAACGTTGATCATCCATCAATTAATTTTGCCGTCGGGGGTTCTCTTCCTCCACTCTCAATGCTTTGAGCCCGAAGCGTTGTGTGATCCTCTCAAGCAGCTCCTTCCGATCAGGTGGAGAAACCATGGCGTTCAGTGTTGCCTTGCCTCTCCAGCAAACGATGGCAATTGTGGTGGGATCCATGGTTATAGAACCTAAATCTAGGTTCTGATGACCTTCACGTAAGATTACAACACAGCAACCAGGTATCAATGATGCAGCTTCCTCCCCAAATCTGGCATTAATAAAGTGAGCAAAATTAACGGTCCTGTACTGTAAAAGGCGCAGGAAATCGTTTGGAGATGCACAGAGTATCCGCTTGCTGATGTATGGAAGCAGCAATGGCAAGCCCTCGTACGATAGCCTATATGCACATGGACAACCATCCTTTGATCGGTGTGTTTCAAACATTTTGAGGCCAAGAGATGCAATCTTAAGCTGCTCTCCAACTTCTACGTTCAGTTGCAAAATTTCTTGGACTGATTTTGATACATAGTATATCCTCCTTGCATTATTAGGATCGGCACTTCTAGTTACCAGATGACCTTCAAGTGGAAAAGATATATTGATCGCAAAGAACGATACAATACTTTTAATCACCGTTAGATCTCTGAAAAATAATACAGGATCAACCCCTTTCCACTTGCATTGGTCTTGCAACTTATTCATTCTATTCCCTGATTCAGCTTGATCATTTTTTACATCATCAGTAACCAAAGCAACTTCAGTTAAGTTGCTATCTTCTGAAGTATGAGCATCTATGCTAATTTTTTTCTGTTCTTCAAGCGATTCATCATCATCAAGAACTTCGGTTTTTGTCACCTCCACCATCTGGCACTCGTGCAACGGGGACAGTTTATGGAGAACTGCAATGAAAAATGCCCCACTGTCTTGGTCGTGAGGAACAATTCTCATGCAACGATGCAGAGGAAAATTTGAGCTTGTACTGTTGGGAGTAGAGTCAGAATGTTTGGTGGTGTTGCTATTTGAAATTCCATCTGTATCACAATAAACTTTGTTGGTTTTTTCAATGCTGAAGTTTCTTGAGAAGCTTCCATTGCTACCTGTGTTGACTTCAATGTCATCACACACAGATTGCCCTTCCTGGATGCTATTATTTGACGGAAACATGCTTGGTAATATTACATTCTTCCTATCACAAGGGACATCGTCATGATTCTGAAACCAAGATCCTTTATCTTGAACCTTCCAAGTGCTAAGTCCAGGACGGTGGACCAATTCTGGTAGCTCATTAGAAACATCAAGAAGCTCGACAGAATTTCCACTTCTCCGAAGAAGCTCAGCTATAACAGCTTCATTTTCAACAGGATTCATTGAGCAAGTTGAGTAAACCATCCTTCCACCCACTTTAAGTAAGGCAATGCCACGCATAGAAATATCTACTTGGAGAAGATGAAGTCCATTCCCCATGCCTGAGTTCCACTTTCTCCACATGTCATGACCCTTGCGGATAGTTCCATCACCACTACAGGGGACATCACAAAGTACCCGATCAAATTCTAATCTTTGAGGTTTGCAGTCTTTTTTATAAATTTCTGAAAGGTCATTTGCAATACGGCAATCAGGGAAGTTTTGCGCTTCATGGTTTGTCACTATCAGGTTGGCTGTGCACATTCTCTTCATATTGTGGATAAGGAGGTCACATCTTTGCGCGTTGACATCATTAGCTACCACCAGTGCTCTCGGAAGTAAACCTGGCTCTTTTGATTGGTGAATCATCTCAAGTAACTGGAAAGTTTTAGAGCCTGGTGCTGCACACATGTCAAGAACATGGTGATCAGGTTGTATATTCAGAAACAATGGTGGCACCATGCTAACAGCCTCCTGTCTGGTTATATTACCAACCTCACTCTCATGTTTCAAAAACTCATGGAAACTCTCAAGAGCTTGATTTTTCCTCAGTTGCTTTCGAGAGAAGTTCAAATGCCATGCAAGATTCCCTGGATACCAAGGCAAGGGCCTGATAGCATCTTCTCCATACTCATCACTCACTCTCCAAATATCTCTTGAAGTCATTCTCTAACTTTGAGCAAATATCCTTAAAAAACTGGGAGCTGGCATTGATCCTAAAAGTCGCTGGCAATGGTTTCCGCAGCACACTGATGAAGTCATCCCACTCCTCCTCGCGAACAATTCGTTGCTCCTTGTAATACTCCTCAAAGGCAGGGTTCTCGAGGGGTGGCGGCTGCCACGAGCGGTTGGCCTCGCCGCGGGCAGCGGCGGCGGGAGGAGCGGGGCGGGGAGCGTGCCTCCAGAAGCTCTCGAGCGCCTGCGTGAGGTGGCGGCGCTGCACCCGGCCGCGCTTCCTGCCGCCGGCGCCGGCGACGCATCGCTTTCCGTGGCCGCCGGCGACGAGGAGGCTGTGGAGCGAGACGGGCGTCCTCGACGCTATCATGTTCT

Coding Potentia
Explanation CPC Score
noncoding -1.00704
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0418300.1 8 23927108 A C
Osa08LNT0418300.1 8 23931821 C T
Osa08LNT0418300.1 8 23932547 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0418300.1 osa-miR156a Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156b-5p Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156c-5p Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156d Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156e Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156f-5p Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156g-5p Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156h-5p Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156i Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR156j-5p Cleavage 4.0 15.136 1 20
Osa08LNT0418300.1 osa-miR395f Cleavage 5.0 13.353 1 21
Osa08LNT0418300.1 osa-miR395f Cleavage 5.0 21.574 1 21
Osa08LNT0418300.1 osa-miR156l-5p Cleavage 4.0 15.136 1 21
Osa08LNT0418300.1 osa-miR171f-5p Cleavage 3.0 19.808 1 21
Osa08LNT0418300.1 osa-miR172d-5p Cleavage 4.5 17.863 1 20
Osa08LNT0418300.1 osa-miR529b Translation 4.0 17.256 1 21
Osa08LNT0418300.1 osa-miR1426 Translation 5.0 13.647 1 21
Osa08LNT0418300.1 osa-miR1855 Translation 5.0 15.092 1 21
Osa08LNT0418300.1 osa-miR2867-3p Translation 4.5 19.012 1 20
Osa08LNT0418300.1 osa-miR2931 Translation 5.0 15.303 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0418300.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0418300.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0418300.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0418300.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0418300.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus