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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0418800.1

TCCTGATGCATATGTATCGTGTATCGGTGATTCCATGGCTCTAAGCTCAAGTAGGTACATACTCAGTAGGAGAGGGCAAGAGCCGTGCAAGAAAGGTTCCTACAGCAGTAAACAGCAGAACAAACTGGATGAAACAAAAGAGTGAAACTCTGCTTGCTCTAGACTGCAACCGCAGGACTTCTGAACTCCCAGACAGAACTCTGCATTCAGCTCTTAGCTTCTCCGCCATCTCTTCTAACATCGCCGCTCGGTTCTTGGTATGCTGTAGTTTAAGTTCAAGCTGCTTGTAATCCCCCGACAGAGATTTCTGCGCGTTATAGAGAGCTATTTGATCGTCAACTAGAGGTGCCCAGGTTTGAGCAGCTCTTGTCAGGATGATGCTCTTAATCTCGGCTTCTGTCTTCTCCAGGAAGAGCCGACCAAGGTAAGATGCTTCTTCTGGTCTGGACTCAGGATCCTTTACATTTTGACTTGTTCCTTCAAGAGGTTCCGCGAGATCGACTAAACCACTCCAATCATCGTCGTTTCCATCAAAATTATCATTTGACTCTTTACTGATCACATTCTCAAGCGCTTCTTGCGTTCTCTGAAGCAATGAAATCGATTCCGCATACGGATCAGCACTCGACTTCATCCCTGATCCAAGGTCACCATTGTTCCCCACACTCCTCTGAGCAGCATCAGCATCCGAATCAACACTCCCCTGTGCCAATCTCCTCACCACCACGCTCCCATTCTCCACATTGCAGTAATCTCTGGCCATCAATGGCGTCTCCTCGCCGTGATCACAGTGATCGGCAAGAACCTTGTGGATTCCATTGCCGGCAATCGATTGCCGCCGGGAGTTCACGGCATTAGAGCAGCGCAGCGAGTACTGCGCCTCGGCGGCACGCGCGCGCGCGGCGCGGGAGGAGCGCCCTGCCCTGTCGGCGGCGAAGGGCGAGAGGTCGTTGTGGCGGCGCGGGGCGCTCGCTGCGGTGGAGGACCTGCTGCCGCTGCTCCGGTCCTCGCTGTGGTCGGAGTCGGCGCCGCCCGCGCCGACGGAGAATCCCGAGGAGGCGACGAGCAGCACGCCGAGGCTCGGATCCAGCTTCGCCGGCGGGACGAAGCGGGACTCGACGGAGGCGGTGGAGCTCTCCTCCTCCTCCTCCTCCAAGACCACCTCGTGCAGCTTCCCCCTCGGCGCGCCGCCGGGCAGGGGTATCCGCCGCTTGTGCAGCTGCGCCGAGCCGCTGCCGGCGGCGGCGGAGGCGGCTGATCCTTCCTTGCGCTGCTCCCGCGGGATACGGCGCCATCGACGGAGCCCACGGCCTTTGGTCTTTATCACGGGAGAGCTCCCCGGAGATGCACCGGCCTCCACCTCCGCCGCCGGCGACCCGACGGCGCCGTTCTCCATATCGGCCGCCGGAGGTGGCATCAAAGAATCGACGAAATCATCGTTGAACGGGGGTTGTCGGAATCGAGCAAGGTCGTAGTAACGAAAATTTTCAGTTCGTTTGGTCTCGTGGAAAGGAGATCGAGGGAGGATGACGAACTGGACGGCGACGACGACGAAAGGGAGAAAAGATACGAAAAAGAAGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.727808
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0418800.1 8 24582619 T A
Osa08LNT0418800.1 8 24583564 A G
Osa08LNT0418800.1 8 24582019 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0418800.1 osa-miR169f.2 Translation 4.5 15.822 1 21
Osa08LNT0418800.1 osa-miR2102-3p Translation 5.0 23.98 1 22
Osa08LNT0418800.1 osa-miR3979-3p Translation 4.0 15.865 1 20
Osa08LNT0418800.1 osa-miR5161 Cleavage 3.0 20.94 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0418800.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0418800.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus