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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0419100.1

CTTGAGCTCCATACCAATTAAAAGGTGACTTTATACATATATATAGTCATATATATGAAATCTTCAGGACCATCTCAATTTCTGGTGATAAGACCAATGGCCTTACATCATAATCAAACGAGCTAAAAGACAGTCTCAGCAAGCTAATTAAAGCAGCAAGAACGGCAACAGGTGCCAAGGAGAGGAAAGCAGAAAAGAAAAAGAAAGAAAAAAGAGAGGATTTGAATTAATTCAGAGAGAGAAAAAATGCCTGGCCTTCCTGCATACCATCATATGATCAGTACCATGGAACGGTTTCTTCTTCACCAAAACTCGATCTCCTCCATTTTGTTGAGCTAAGCTCGCATGGCGGCCTCCATGCCTTGGCTCTGCAGAAGAACTACTGAGAGAAGACGACGGCGGCGGCGGCGGCGGCGGCGACGACGAGGTCACCGGAATGGCCTCCCGGAGACGAGGAGGAGCAGGGAAGCATGGTGAGGAAGGGAAGGCAGGTTGAAGGAGATGGTGGCATTGGCATCCTCCTCTTCCTTCTTCATATGTCCCAATGAACTGGTGCTACTTGCACAAAGCACAAGCGTGTGGGTTAGAGAGAGAGAGAGAGAGAGTGGAGGGAGGGAGGTTTCTC

Coding Potentia
Explanation CPC Score
noncoding -1.02292
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0419100.1 8 24795920 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0419100.1 osa-miR815a Translation 4.5 16.002 1 21
Osa08LNT0419100.1 osa-miR815b Translation 4.5 16.002 1 21
Osa08LNT0419100.1 osa-miR815c Translation 4.5 16.002 1 21
Osa08LNT0419100.1 osa-miR1847.2 Cleavage 4.0 16.44 1 24
Osa08LNT0419100.1 osa-miR3979-5p Translation 4.5 20.156 1 20
Osa08LNT0419100.1 osa-miR5073 Translation 4.0 15.349 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0419100.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0419100.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus