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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0419200.1

CATCAAATTGACGCCTAGTGTAGCCTAGTGTTTGACAATCTTCACCAGCATCCCTGACGGCATGAAAAGATCTGAGGCACTTGCCTTCGCAGCTTGCAATTTCACCACCGTTATCACATAAAGCACAAACCAAATCAACATTAGCAGAACTCTCGCCTTCAGCGTTATCAGTCATATCTTCGAGTTTACAATTGCAAATTCTTGCTTCACTCTTATGCCTTTTATAAAACCTCACGATTCGAGCAGCTCGCAGCAGGAAACCATCGGGATGCGCTCGCTAGGGTTTCGATCGCCGCGGAGAGACGAATCCGAATCCCCTCCTCCTGCACAAAACCCACAAGCCAAAAACCCAACCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACAGAGATGAACTGAACACCACGCACGCTTTGAACGAAGTGGGAGAGAGAGAGAGGAGAGAGGGTCACGTCCAATTCATGCTCGCCTCTCTCTCC

Coding Potentia
Explanation CPC Score
noncoding -1.13949
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0419200.1 8 24808472 T C
Osa08LNT0419200.1 8 24809540 T G
Osa08LNT0419200.1 8 24810434 C T
Osa08LNT0419200.1 8 24811631 A G
Osa08LNT0419200.1 8 24808509 G A
Osa08LNT0419200.1 8 24808677 A G
Osa08LNT0419200.1 8 24808844 C A
Osa08LNT0419200.1 8 24809184 T C
Osa08LNT0419200.1 8 24809067 T C
Osa08LNT0419200.1 8 24809084 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa08LNT0419200.1 DTM_#DNAt_MULE_japo_Os0089 Chr8 - 24808480 24809222 742
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0419200.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0419200.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus