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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0419300.1

ATTTGCTCCTGTTCATCGTATTAATGAATGGTTGTTGCTCCTAACCATCATCAGACAGGCACTCTTTCAGCCTTTGCTTATACGCATCAGTTGAAGTGTTCTTGCATAGTGCTGTGGTGTTTCAGAATCTGTTGTCGCTTCACCTGCCACCAGTTCTACATCTGCTGCTGATTATTTACAACATGTTCTTGTAGCTCTACACAGTAGACCATGCTTATGATTTATGAAGTGTTATTGCTGTCCCAATAGACCTACAAGTTCTTGAACATATTGTAGAAAACTACCATGACCACCAGACCAATGATGGCACATGCGACTATTGTCCTCCTGTTACTCTCATCAAGAGTACCTTCTGGCAGAAGCTTATTCGCCAATGTCAAAATTACCGCATCCAAATTCTGGTGAATTATCTCAAGAATCCTCTGAAGTAGTGGCACATAAACCTTGTTCACTTCATTAATGAGCAGCATGCCCCTGTAGACGTGATTGGTGGTGATGTTGCAGTCTAGGTCCCAAGGCAGCTTCTTGCCCTTCCATTCTAGAGACCATTTGACGCCTAGGTCGAAGCCTTCGTTTTCAGTCGGCTTGAGCACGAACGATACGTGGTGCCTAAGCATCATTGCGTGGAGGAGCAGAAACATGTTCTTGCTCACTTGTGAAACGTCAATGGAGGAGATTCTACCGAAGAAGTAGAGGCACTCGTCGCCGGCGAGCTCGAGCAACTCCCTGACGCTCCTGTTCTGCACGGCGGAGTTGAGCTTCACCAGCCTCCTCACCGCCCGGAACCCGTCATCTCCGCCGCCGCCGTCGCCGAACAGGGAATTCACGCGCACTCGCCCCCTCACCCCCGCCGCCGCCGCGCTCTTGCTGCTCCGTGTCCCGGCACGCGGCGGCGCCGCCGATGGGAGAAGAAGAAGACGAAGATGACGACATGGCGCTGTCGTCGAAGCCGAGAGAAGAGCTGCATCCATGGCGTCTCGGATGTTTGGATTTTCTTGGGGATCGCGAGGTTGATCGGTTCGAGGGGTAGCTAGCTAGATATATGATCGAATTCCTCGCGGGTTTGGAATTCGATCCGTGGACTATTCCGGCGAAGAAAGCAAAGGATCGGATGGAATGGAATGGAATGGAATGCGATTGAAGGAGATGCCCGCAGTAGAAGAGGTTGCGAGGTTGGCAAGGCAGGGATGCTCTTCCAAACTTGGCTTGAGGTCCATTGCCCTACAAATGCTACATGCCATTTCATGGCTATAGCTGAAAATATGCTTCAGAAAGCT

Coding Potentia
Explanation CPC Score
noncoding -1.17765
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0419300.1 8 24842163 G T
Osa08LNT0419300.1 8 24842981 C T
Osa08LNT0419300.1 8 24843168 T G
Osa08LNT0419300.1 8 24843796 A G
Osa08LNT0419300.1 8 24843836 T G
Osa08LNT0419300.1 8 24843865 G A
Osa08LNT0419300.1 8 24843982 T C
Osa08LNT0419300.1 8 24843047 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0419300.1 osa-miR531b Translation 3.5 22.293 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0419300.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0419300.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus