\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0419500.1

GGAATATATACGAAGATAGACAGCTTGCGATGTGCTATAGTCCAAAACTTCTGATTTGCCAAAATAAAGTTTGATGTTGCAATTCAAACTAAACTCATTCTAAAGATGCAGAGAAGGTAAAGCTTAATCCGTTTCGTCAACAACCTTGGTTCCCAGCCCCTTCAAACCCTCAGGAGGGACCTCGGCCACAGTGACCAGAGAGTAGAGCTCTTCCTTGGCATCCTCCTCGTCATTCCTCTTGCGGGCGATCCTCACACGAACCCTCCGCGGCACACTCCTGATCCCACTGCTCCAGATGTGCTTGTTGAGCTTCACATCGACCCTGACATCTGTAGTGCCCATAGCCTTCTGCGCAAACTTCCTGATCTCTTTGATGGCATTGGGCGCCTTCTTCTTGAATGTACAGCTGTGGAGGCGCTTGTGGAGGTTGATGGTGTACTCCCTCGTCACCACCTCCTCCTTCCTCGCCGCTCCTCCCTTCTTCTCCACCATCTTCTTCTCCTTCTTCCCTTCGCCCTAGGCTGGGTTTGCCGCTGTTCCGGCGGCGCGAGAGGAAACCCTATCTCCGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.693234
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0419500.1 8 24993855 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0419500.1 osa-miR6246 Translation 5.0 14.202 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0419500.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0419500.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus