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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0419600.1

ATAACTCAACAAAATAAGCACTTTGACCATTACGAGCCATAATGGAAGCAATAGACCCATTACAGCCTAAAATGTGAATCAGATCCCATCTGAACAACTGAAGCAGTTGGGCCAATACGTGAAGCGATTTTGGCCCAATAATCGAGGCAATACTGCCCTTTAAGGCCTCCTCAAATGTTACTATATAGGCACTAAAATACAAAGCATGAAAAATGAAAAACCACAAAAAGCATGTTAAAGTGGACTTGGGAAAAAAATACCTGTGCCATATTGGTAGAAATTGTTACGATGTATGTCACTTTGTAGAACTCTCTCCATACCATCTGTTTTTGTGACCTAGGTGGTTATCTGCCTTCACTCCAAAACAACCTTGGATAACTGTTTGCTGCTCGGCGAGGCGGAGCCATCTCCGGCGAGCGCAGCAGGAGACGCCATCCCATCCCATCCCGTCCCTAGCCCATCTCCGAGAACGGGATAGGGCGGAGAAGAAGAGCCGCCGCCGCCGCCGCAGCCCCCGTCGTCGCCGCCGCCGGCGCGTATCAAATTTGGGGGATTT

Coding Potentia
Explanation CPC Score
noncoding -1.19783
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0419600.1 8 25053682 T A
Osa08LNT0419600.1 8 25053864 C T
Osa08LNT0419600.1 8 25054866 C T
Osa08LNT0419600.1 8 25054899 A G
Osa08LNT0419600.1 8 25055388 T C
Osa08LNT0419600.1 8 25055430 T C
Osa08LNT0419600.1 8 25055491 G A
Osa08LNT0419600.1 8 25056073 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0419600.1 osa-miR171d-5p Cleavage 4.5 23.03 1 21
Osa08LNT0419600.1 osa-miR171e-5p Cleavage 5.0 23.03 1 21
Osa08LNT0419600.1 osa-miR2872 Cleavage 5.0 13.053 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0419600.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0419600.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus