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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0419700.2

TCCAGATAAGAGTGACAAATTGCTGATGAACAAGGCATTTATAGTCCTCGAGAGTCCAGGCCAAGCAGACACCCCAACAAAACAATTCACAGTTGAGATGGGGTCTATTTCAGTTGGCTCGTGAGCACTGAGCAGACAGAAGTTTTAAATAGCAGTGAAGTTCTTCACCAACCCTCGTCACCAGATTTAACAGAAATGAAACAACTATGCATATGCATGCAAATGGACAAACTAATTGTTTCAGTACAAGTGCACAGCTCAGTGTGGGACAAGTCAGAAGAGGCTCCATCTTACTATCATACTCCTAGATAATTACCTTCTGACTGCAACCAGTATATATGAAACTAATGAAAATGATTCTTTGACCACAACATCAGGGATTCAGGGGTCCAGTTCACATTTTGAAATACAACATGTAAATAATACCTCGACAATGAACAGGTTGAATTTGCAAGGGAATCCCATGATATCGTCCTGCTCCAAATGAAATGTTCGCAAGTAAAAATCACATGGTAGGATCTGAGGCATTCAATTCAGAAGCAACAGTGTGTCAACTCTTACGAGTGTACCATGAAAAATTCAAGTAGGTGTTCTCATGCATAAATGTCCTCGGCAGGGAATAGTCCTTGCGCTTCTTCCGGGAGCTCCGGCTGATAATGGAGCTGTTCATAGTTGAGTTGTCTAGCTGCCTCGTACAGTGCTACTCCGACGCTAACAGAAAGATTTAGGCACCGGACATAGGTTTCCACCATTGGAATTCGTATAGTTCCACCACCTAGGCCTTCTCTAGAGCAGTCCTCAAGGGCAGATTGTGGTAAACCTTTCGTCTCAGAGCCAAATACTAACCAATCCCCAGGCTTATATGAGAAATCTGAATGAATGCTCGTGCCTCTTTTGGTAAATGCCAGTAACCGTTTTTCTCCATCCTGCTTCATGAAATAATCTCGGAACTCGTTCCAGGAGTCATGAATCTTGACAACAACATATGGCCAGTAATCCAATCCAGCACGCTTCAGCTTCGTGTCATCTACCTTAAAACCTAATGGCTTACCCCGACAAGATGCAGCCCAACTGCTGACGCAGCACATGTCCTCGCAATCGATCCAGTGTTTCCCGGGATCAGAGGGGAGACCAGCACCACGTGAAGCATCCTCTTGGCGCGCGCGACCTCGGCGCCGCTCCCGACGGGTCCAACGGCGGCGGCGGCTCCGTTGCCGGTCGTAGCAAGGGAGCAGAAGGCGCCCGCGAGGCGCGGGCGGCGGGGGTGGAGCCGGCCGCCGCCGCCGCCATGCGCGGCG

Coding Potentia
Explanation CPC Score
noncoding -1.06794
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0419700.2 8 25064190 A T
Osa08LNT0419700.2 8 25065105 T C
Osa08LNT0419700.2 8 25065863 A G
Osa08LNT0419700.2 8 25066324 T C
Osa08LNT0419700.2 8 25066331 T G
Osa08LNT0419700.2 8 25066351 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0419700.2 osa-miR5798 Translation 5.0 17.586 1 21
Osa08LNT0419700.2 osa-miR1865-3p Translation 5.0 10.44 1 24
Osa08LNT0419700.2 osa-miR1879 Cleavage 3.5 16.605 1 24
Osa08LNT0419700.2 osa-miR5145 Cleavage 4.5 13.832 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0419700.2 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0419700.2 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus