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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0420200.1

GCTTTTTGGTGTGGTTTCGCTAGAAAATCGATTGGTGTATACATCGTGATCGCTTTCTTGAACTTCAGCTATTATTAGCGTGTGATTTTTTTTGTGTGATTTTGATGACGGCTTTGGTTTGTCACATCGAAGCTGATCCTGCTATTAATCTCGCTAGTGTGGATAATTAATTATCCAGGATATGATGATAGATACTGCTGCATAAAAAGGCTGAGAAGCTAACTCGTTTTTCAGATGAAGGAAACGTTAATTCATGCTTTGGTTAAAGCCTTGTAGCCTTTTTAATTTGGTGCCTTGTGTTATTGAAAAAGTCGTGATAAATTTCTGTTCGTCATGCGAAAGAGAGAGATATCATGAGCAAGTACAAGTACAGCTGGTAAAAAATCGTTCCAAAAATCTTCACTTGCAAAAAAATATTCGGAAAAAAAGGTAAAAGAGGGAGATATCATAACCAAGTACAAGTACAGCTGGTAAAAAATCGTTCCAAAAATCTTCGCTTGCAAAAAATATTCGGAAAAAAAAAGGTAAAGAAGGCATTAGATGTGGTGAGGTAGTTGGGCTTTTTTCTTGAGAGGCCCAGCCACATTCAACGATAAAAAGGCCAGCCCAAATACTGACTAGCCTAAACATCGGGTCCAATCATAATGAGCAACTGATTGTTAGTGTTAGGATGAAAACGGTTAGAAACGATATCATTTTTTTATTTTTTTTAAATGATTGAAAAATTTTATACTTACTAATTTGTTTATTTAGTTTCAACTTCAATGCGACGCTGATAGAAATTAGAAAAACTAAATTTTAGAAACGGTAATAGTCGGTAAAGATATCATTCTTAGATTAGTTTTGCAAAAAGGAAACGATACGATCGGGAAATTTCCATACTGTTTTCACCCCTTGATTGATTGTACCTGTAATTGTTAGATCAAATCCTTGAAAACCAATTCAGTGAACTTTTGACACGAT

Coding Potentia
Explanation CPC Score
noncoding -1.33531
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0420200.1 8 25396429 A G
Osa08LNT0420200.1 8 25397010 T C
Osa08LNT0420200.1 8 25397112 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0420200.1 osa-miR169d Translation 4.5 21.033 1 21
Osa08LNT0420200.1 osa-miR5080 Cleavage 5.0 15.393 1 21
Osa08LNT0420200.1 osa-miR5071 Cleavage 4.0 14.439 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0420200.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0420200.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus