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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0420300.1

AATTCTCAAGTAAGTCATTATTAAACTGATAAACATCACTTATTGCTACATTACATGATGCTTAAAATACTTTTTATCGGGTCACAAAACAGTTGCAGGAGAGTGGAAATTGCCAGCATTTGCAATCTCACTTTTCTTTTGAAGACTTTATTTGCTGGTTGTCTTGATTATCTTGTGGAGTGCTCTCTTGGCTTCCTCTAGTGTCTCCACCTTGTGAGGTACATCAAATGCCAGCCTCTGAATGTTGAACTGTGCACCCTGGCGAACCCTTATATCTATCCCTTTGCTGTCTACTGATATAAGTGCAGCATCATCAACCTCCCCTTCTGATGACAAGAACTCTCTAAGTGGCTTCGAGAAAATTGCATTCAGCTCCTTTAAGCTTTGTTCACCACCATCAACTGCTATCTTGTCGGGTTGAATAGCTTCATACTCCTTGACATCTACCCATGCAACAGTGCCAAAGCCTCCAATGAAGTATATGTCGCTTATGTTCTGCATCCTGTAATAGTAAAAATTTCCCCACTGTTGAGATGCCCATTGTTGATGTTTTGCAACATACTGCTTATGTGCCCACTCCTGTTGATCTTCTGGCAAAGGATATACATCACCAAATATTGTGACACGTGCATTTGACAGTCCACTCCATCCAGGTACCTGGACAACAAGTGTGCATCTTGGGTCAGAGAGCAAGTTCCTTGTGTGTATTGCTAACGGTGATAGTGAAAATATTGGATGGCCCATCGAGTCATTAGAAAAATCAACAAGCGAACCAAATGGGTATCCAGTACGCCGATGATGCATGCCAGACATGACAGTGCACAGATGAGCAAACCGCGCCTGTTCCATCAAGTTGCGAACAGCCAATGCCGGCGGAGGTAGACCATGGGCAAAAGTCGCACTCTGCACACCACCAGATATAGGTGTTCTAAACAAGCCAGCTCTGGATCCACTCGAGTCAGTGGTAGTATGCGTTGATAAGGTCGTGTGTGGCTTGTCAGTTTTGGTTGATCCAAGAACTCCATTCTGACTCGAAAGAGCCGAGTCACTCTTCGGCTGTTGCGTAGTAGGAATCAGTCATGTAAATATCAGATCACAATGCAGATTTGTGTAACTAAAATGAGTTAACTCCATCAGTTTTGTTCTCTTAACAACATGACGATAAATACTATCAACACTAACCCAGACACACGATTCCTAACTAACTTTATCATTTGGTAGCTTCCAAAATGCTTGCTACAAAAGAATCATCTTTTCACACCATCTGGTAAACCAGCTCAGCCTATTTCAAACGCATCAAGCACCGAAATTTACACCTCGGTAAGGACAACATAGAACTATCCAAGCACGCCCACACACACACCTCGCATCCAATCCAGCATCGAACTGAACTCCCTACACACAATTAATACAGCCAACCTCTTTCCGGATTCAACCAATCCGTATTACCACCCCCATCAACTCACAGTCTCACACAGCACACTAATACCCAACCATAAAACCCTTCGCCTTTATCTCTCCTCGCTCCACCGCACGCGAGGCGGCCGGCGTTACCTTGATAACGGGAGACCCGTTGGGCGTGACGCCAGCCTGCGCGTCGTCCTTGGCGCCGCCTCCGCCACCGGCTGCGGCGGCGCGGAGGGGCCCGCAGCACGAGCGGCCGCCGGGAAGGGCGAGTGACCGCGGGGCCAGGCGGGACCGCGGCTGGTGGGAAGGCAAGGCCGGCAGGGAGGCGGCGGCGGTGCCGGCGAGAGCCTCCATTGGACGGGAGGGGCGGAGAGGAGAGGCGGCGCCGCCGGACGACGGTGAGGAGGAGGAGAGAGAAAGTCGCGGCGGAAGGCGGCTAC

Coding Potentia
Explanation CPC Score
noncoding -1.22587
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0420300.1 8 25684490 A G
Osa08LNT0420300.1 8 25684893 A G
Osa08LNT0420300.1 8 25686410 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0420300.1 osa-miR169a Translation 4.5 21.233 1 21
Osa08LNT0420300.1 osa-miR169g Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169h Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169i-5p.1 Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169j Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169k Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169l Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR172b Cleavage 4.5 17.221 1 21
Osa08LNT0420300.1 osa-miR166i-5p Translation 4.5 13.764 1 21
Osa08LNT0420300.1 osa-miR414 Translation 4.0 22.195 1 21
Osa08LNT0420300.1 osa-miR416 Translation 3.5 18.036 1 21
Osa08LNT0420300.1 osa-miR1429-3p Cleavage 5.0 16.676 1 21
Osa08LNT0420300.1 osa-miR1855 Translation 5.0 19.347 1 21
Osa08LNT0420300.1 osa-miR395x Cleavage 5.0 12.069 1 21
Osa08LNT0420300.1 osa-miR1862f Cleavage 4.5 14.122 1 20
Osa08LNT0420300.1 osa-miR1862g Cleavage 4.5 14.122 1 20
Osa08LNT0420300.1 osa-miR169b Translation 4.5 21.233 1 21
Osa08LNT0420300.1 osa-miR169c Translation 4.5 21.233 1 21
Osa08LNT0420300.1 osa-miR169e Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169f.1 Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169m Translation 5.0 21.233 1 21
Osa08LNT0420300.1 osa-miR169n Translation 4.5 21.233 1 21
Osa08LNT0420300.1 osa-miR169o Translation 4.5 21.233 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0420300.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0420300.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0420300.1 8 nan Physiological trait Source activity RZ66 RG598
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus