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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0420700.1

TGGACGGAAACTATATATTAGTATAGCCCCAAGTGTATCTATGTTCACGAACAAAAAACCAGATATCATGCACGCATTAACAAAGTTACAGGAAACAATAACAAATAAAATACCAACAAAACAAACGCTGAAATGCAGAGGTTTCCCCGTAAACCTCAGCAAAATGCAGATATAAAAGGCCGCTGCGACACAAGTTCATAGCAAAGATACACCGGGGGAGAAATAAGAAAACTAAAAAAGAGAAGAAAACTATGGTGGTATACAGCACTTTTCAGGGTTGCCCATGACCCAAATATATCCTTCCACCATTGCTGATTCTGCTCCAAGATCTGCAACCCTAAATAGCGGGTGAGTCCCAATGTATCCCACAAGTGCCTACTTATCAGCATGCCGGCGCTTGTGTCTCCTATGGCCGTGGTTACCGCCATGAGGTGGTCTCTTCGGCTTCTTACTGCAGAATGCTTCCATTAGAAGCCTGTATATAATATAGACAGGGATAGCCAGCAAAGCAGAAGCCAGGAACCAAACCAACTCCTTCGTCGCAAGTGATTTGGATACCTCATGTTGGTGTAGGTAATCTAAGATGGTTGATTGCGCCTGCCGATGGTATGTGGTTGCTGATTCAAGAAATGACCCATACACACGAACTGCTCTTTTAGTATACGGCTTAAGAGTAGTTCTAACTTTCTCAACATGTGGCTTTGTAACCTCAGCAACTTGATCAATGTAGGGTTTGGAGAACTTCTTGGCTTCCTGGAAGTAGGGATCAGCAAACTCTTTAACCTTTGCAACATGAGGTTTAACAGCATCCCTTGATGCCTCATAGACCTCCACGGATTTTGATGAGACCTTTTGTACATAAGGTTCTGTGTTTTTCTTGAGGACAACCAATTTTTCCTTCACTGGAACCCATTTCATTTTAGCAGTCTCCACATGTGGCTCAGCCCATTTTTTTGCCTGTGCTGATTTTTCTGATGCCTTCTGCAGAAAACTGTTGATAGCAGGTTTTCCATGTTCATTCCAGTGACCAGAGATCACCTCCATATAATGAGCAGAGTGCGCAGCTAACCAAGGTGGCAACCATGCTCCATGAACCTCTGTCAGCTGTTTTGACTTAGTTGTTGCTTCCAAATGCAGCCTCATCAGTTCCTCCTCGGCAACTTTCAGAGCACGTTCTGTGCTTTGAAGCTTGCGCTTTTGCTCATCATTTGTCTTTTGGAGTGCGTCAATCTTTGCATTCAACTCTTGCACCCTCTTCTCTGCATCATTAGCTCTGTTCTCCAAAGTAGCTTTCTTGACACTTTGTGCTTCAACATCCTTCTTGAGCTTGTCAATCTGCTTCTCAAGCTCAACAGCCCGAGCGTTGGCCTTGCCAGCCTGCTCCTCAGCAGCCACAGACCCCTTTGCCTGGAGGGAAGTAATCTCGCTCTGCAGAGAAGCAATCTTCTGTGACTTCTCCTCGATGAGCTTCTCCAACTTTGCTATGCTATCATCCTTAGCCTTCAGTTCCTTGGATCGTTCTGAGATTCCTGATTCTAGGCCGGAGATCTTATCCCTCAGCTGCTGCAGCTCCGCCCTGAGCGCCACCGCCTCCGCCTCCTCCTTGGCCCTCTCCACGATCCCCTCCTCCACCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.661465
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0420700.1 8 25799557 A G
Osa08LNT0420700.1 8 25799984 T C
Osa08LNT0420700.1 8 25801239 G A
Osa08LNT0420700.1 8 25801370 A G
Osa08LNT0420700.1 8 25801763 T C
Osa08LNT0420700.1 8 25802112 T C
Osa08LNT0420700.1 8 25802333 T C
Osa08LNT0420700.1 8 25803133 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0420700.1 osa-miR437 Cleavage 4.0 12.614 1 21
Osa08LNT0420700.1 osa-miR390-5p Cleavage 5.0 15.688 1 21
Osa08LNT0420700.1 osa-miR2092-3p Translation 4.5 21.088 1 22
Osa08LNT0420700.1 osa-miR2872 Translation 5.0 19.089 1 21
Osa08LNT0420700.1 osa-miR5510 Translation 4.5 13.011 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0420700.1 8 nan Physiological trait Source activity RZ66 RG598
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus