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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0420900.1

CTATAATATGAAACGGAGGGAGTAGACGATTATATGTACATCGTCCAATTGCTGAAACATACCACACTCATAAACATTTACTGACACATTGCATAATTGCGTTCTTGCAAACTGGTGAGGAAATTTTAACAATTAACACGAGCTAATAATTAATTAAGAGAGGACTTTGCTTAGAATCCATAGCACGAGAGTCATCTCGAAGGCGAAGATGGTGTGGAGCAATCCCCTGTCCAGCGTGAACCCGAACAGTGTGATCCCGCCGCTGTTGTGGCACAGGTACGTCACGAGGGCGTGTCTGCTTCTGTAGGCGCACGCCGCCGTCGTCGTCGTCCCGAGCTCCGGTTGGTGCGGCGCGTCCACGTCGCTGGCCGACGAGCTGGGCGCCGCCGGCAATGGCGCCGACTTGGCGTGGTGCGCCACGGCCTCCATGCTCATGTGCCACTGGCTCGCGATGGACACGATCCTTTGCGCTCTGTGCGTGATCCTCGCCGCGCCGAAGAGGCACATGAAGAAGCCGCTGAGCTGCACCGACGAGCCGACC

Coding Potentia
Explanation CPC Score
noncoding -1.09435
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0420900.1 8 25934572 T C
Osa08LNT0420900.1 8 25934624 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0420900.1 osa-miR167d-3p Cleavage 4.0 23.927 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0420900.1 8 nan Physiological trait Source activity RZ66 RG598
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus