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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0421100.1

CACTGAAGCAGTCATAATGGAACTATATTACAAACTGCAATTTTTAGTTACATCGGCAACCAATTTTTCTCCAAACCATCCAACATATTTTCTCAGAATTCTTTCGTCTCGCTAAAAATCTCTGAATTCGATGAAGCCATCCGACTATGAAGCATCGATTTCAGCAGTTTCTAATGAGGAAATTTCAGGCTGCTGCTGCTGAAGCTGAACCCACGAATGGTAGTCTCTCAGCAGCTGCTCCCCCAGCAAGGGCACGAGCCTGTCCAGGAGGCCTTGCATCAGCAGGTTGCCTGGTGTCTCCACTGCTGACAATGGAAGCATGCTGAATGGCTTCGTGTAAACCTCCAGAGTGACCTCCAAATTGACATCAATGTCCAAGCATGGTTCCTCACCATCGTCTTTCCAAGTTATATGGTTGCTCATAAAAGCTGCAAACATCAAACCTCTAAATCAGACACACATTTTATTTTGTTGCCCCGGAAAGGAAGTTCAGAGTTCAGAGTTCAGACTAAGCAGTAATGATTCGCATGGTTACAATGGTTAGCAAAACAGATGATTGACAACGATGAATTGATGACCAATCTACTAATTGCACAGATAAATCAGATGTCTCCACTCAAAACTGCAAAGAATTTTCAAGAACTGCGAGCCAATCAGCTAACCGAAGAACCTGAATTTTTTTACCTGAAAAGAGCTCATTCTGCTGCTCAACTGAGCCTGAACCCTCAAACCTGCAGGAGAGCATCTCGACGGTGCAGTCGTGGCATGTCGGGGCGACGCGGAGGTCGAGGACGGGGGCGACCTGGAACCCGAGGAAGCCGATGCTCTGCAGCGTGCACCGGAACGTGTTCGCCCCCGGCGCCTCGTCCACCGCCGCGAAGCTCTGCAGCGCCCTCGTGTTCAGCAGCGACTCCACGCCGGCGGGCTGACGCAGGAACTCGCCGATGCCCCCAACGCCGCCGCCCTCCACCACCACGATCCTCTCCCGCCGCCTCGCCGACAGCCGCGCCCGCCTGCCCCTCGCCCTCGCCGACAGCGATTGGCCGTCCTCATCGCCTTCGGCTTCGGCGTGCGCATTGCCGCTCGCCGCCGCGGCTCGCCATGGCCGGCGGCGACCGGCTGCAACGGCGGCGACGCTTGAGATTCGGAAGAGGCAGCAAGGTTTGGCAGCCACGAGCCTCATTCCATCGTCCACTCAGCTGAGCTCGAGCTCGCGCATGGAGTGATGCGAGGTTGGAGTTGGAGAGGAGCAGCGGCGACGGCGAGCCACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.741917
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0421100.1 8 25953068 T A
Osa08LNT0421100.1 8 25953417 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0421100.1 osa-miR1854-5p Translation 5.0 9.99 1 21
Osa08LNT0421100.1 osa-miR1879 Cleavage 4.5 9.085 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0421100.1 8 nan Physiological trait Source activity RZ66 RG598
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus