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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0421300.1

GTTAAATCATGAATCAATTCACGATCGAGTCAGAACAGCGGTTTGTAACACTTGTAAAGGAAGGCCATTGTTATAGTGAACCTCATGGGTCATGCCGTCATGGAAAACTAGATATTTTCCCTTTTTCAGAACCCACAGGAGAAAAATGCACGCCATTACATACAAATCAGATCAGATGTAGTCAATGAGCTAAGAATCGTGTTGTGCACTTCTTACCACATTGTTAGCCTACAGGGCTAACAAACAAAGACTAAATGTCTAACTCTAACTACTGCTCAAGTTCTTTTGCACACAAGATGAATGTGCAGGAGTGGACTAGTGAGGTTCAGGCCAGCAGAAACTAATTAATCATAATCAGCAGGAGTAGGGAGGTAAACACGATGGAAGCTCTTGATCCCTAGACTCTTCCTACAAGTAGGGCATTTCTTCTGAGCCTTGAGCCATGCCTGGATGCATTTCTCGCAGAAGATATGACCGCAATTTGTCGTGGATGGCTTGTCCAGTTTGTTCAGACACACAGGACAGGTAAAGGTTGGTTCCTTTGGAGCAACCTTGGCATGCGTCGTACTGGTTTGGGCCACATTTTTCGGCTTGCTGGTCCCTTCTTCCCTATCTGGAGAAAGGCATATAACATGTACAGCACCCTGAAAATTTCTGCCCCGGGAAAATATAGCTCCAGCAACGCCATAACCTCCCGGACCAGTATCCTTCTCCGGATCCACTACAGCCACAGAGCGCCTCATAATTTTTCTGCTCCTCCTTTTATCATCTAGAGCTTCAACATCGATGGGTGAGGTCCGTGTACCCCTAAGGATCAGAGCCTCATGCTGGCTCCCAGTGTTCACCACTGGAGCAGTTGTTTCCAAGTTTATAACATCAACTTTTTGTCTGGATCCATCATGGGCTCGCTTCCTAGAGCGTGCAGTACTTGCAGTACTCATGATTCTTATGATATTTGGAATAACCGAGACTGCTAAACCCCAAACCCTGATCAAGAGTGCCTGAATTTTTCCCGAATCCGTCACAATTCACAACGAACTGAGGGGGATCAGCTTACTAAATCAAGAAAAGTCTTAGCGAGCCCGATCCCAGACGACGATGGAAACCGGACGAGCTTGCCGAATCGGTCTCGAACGAACAACCAAAACGAACCGCGGCGCAAACTCGCTAGGGTTTCGCTTCGAGTTCGGGACGGATCGGAAGGAAAGGGGAGTCGCTGTGGACTTTGG

Coding Potentia
Explanation CPC Score
noncoding -1.17814
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0421300.1 8 26190323 A C
Osa08LNT0421300.1 8 26189820 A T
Osa08LNT0421300.1 8 26190574 T G
Osa08LNT0421300.1 8 26191150 T G
Osa08LNT0421300.1 8 26191415 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0421300.1 osa-miR395u Cleavage 5.0 13.171 1 21
Osa08LNT0421300.1 osa-miR5510 Translation 5.0 19.135 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0421300.1 8 nan Physiological trait Source activity RZ66 RG598
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus