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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0421400.1

CTGGGGTCCATGAACTGTCCTACATCAAGGATCTCCTCAAAGCTCACGTGTCCTCTAACTTTACCAGTCAGCTGGGATCTTTTCAGATGAATGGCAAACACAGGTGGCAGCTTGTTAATAAAACGAGTTTGAATCCCACCTTGATACCTATCCTCCCGCTCCTTTTGGTTTGGACCCACTTGGTCTGCACTATGATCTAGCTTTACTTGATCTAGAGAGCTGGCATTTTGACCCTGGCCACTCAACTGGTTGGCCAGTTCCTCAGCTGCAAGGCAGCTAGGTACAACTTCTTGAACACCTTCATGGCATTCATTTTTTTTGTTGGCTGTGTTATCAGAGGCCAAGTCTTGTTCACCACTGTCCAAATTGCTAGATTGCTCGCTTTGGCATGCTATCTTGTCCGACTGCTCAGTTTGATCTCCATCAACTATTTTATTCTCACTGGTGCTTGCCATCATCTGTTCACTATCTTTACCACTAGTGGTGCTCCTACGGCGAGCAATTTCAGAACAGTTCTCACATTTCCATTCCACCATCTCAGCTTCAAAATGCAGTTCTAGGCACTCCTCAATCGATGCAAGAGAGTTGTTATCCTTCGCCTTGCCATAAGCCATATTGCTAAACTGAGCTTTCCCCTTGTCTTCTGCAGAACCTTCTACAGAGCAAACGTTTTTCTTGGCTTCTATACTAACTTCTGGCTCACTGGGCGTATACTCAAGACCAGCATTGTAATTTTTCCCTAAATCATCAGCCTTAGTTGGCGCCTGAATAATCTCCCCTGGGACCTCATCCTTCTGAATTTGGGAAGGAACATGTACACCATCCTTGCTTTGCGAGTGCTGTTCCACTTCAACAGAATCTGCAGAATCAAGCATATATAAGGCTATAATTTATCTGCATCAGCAACAACATACAACCATCAACCTTCATTCTCTACGATCTGAAGCTGCATTTCTTCGAGAATCTCCGTACTTGATTAAGTAAACCAACCTTCTAGAGCAAAATTTTGTGTATGAAGACAAGGACTCAACAAATAAACAATCTTCCACTCCAAGCTCTTAATTGCTACACTACGACAAACAACTCTTCCATGCTAACACTGCTCAAACGTCATGCTTCTTTTATGTAGCCATCCTGAAGGTTTTCCATATATTTCTTCACTCCATGTGTTTAGCAAGCCCTCACAACTTTTTCTGTCTAACTAGAATTGGGGATCCATTCCAAAAAAAATGTATGTTTTCTCTTTATGATGAGAAAAATAATGGTGGTGTGATTACAATATTCCTTAGTTTCTTGCATTCAATCCTCAAAAGATGTATATGGTCTGCACAATCCTCTATACCTGCATATCTGTTTAAAAATGTTCTCTCTTCTTTTATTTAGAAACAGGATGCATGAACTTACCAACTTCCAAAGGCTCAGATGGTTTTTCTTTGTCCACATCTCCCAGATCTAAACCAGTGATATGAGAATCACGTCCTTCAGCAATTGCATGAACAATTTCGGTGTTACTCATGTCAACCTTTGGGAATAGTTTGATACCAATCTTCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.904667
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0421400.1 8 26241418 A C
Osa08LNT0421400.1 8 26241992 T C
Osa08LNT0421400.1 8 26242251 T G
Osa08LNT0421400.1 8 26241877 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0421400.1 osa-miR5816 Translation 5.0 18.81 1 24
Osa08LNT0421400.1 osa-miR1851 Translation 4.0 9.5 1 21
Osa08LNT0421400.1 osa-miR1860-5p Cleavage 5.0 10.075 1 21
Osa08LNT0421400.1 osa-miR1862f Cleavage 4.5 10.227 1 20
Osa08LNT0421400.1 osa-miR1862g Cleavage 4.5 10.227 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0421400.1 8 nan Physiological trait Source activity RZ66 RG598
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus