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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0421900.2

TGGGCATAACCATTATACTTGTAACAAAAATAATGTGTGCCTCAAGCTAATAGGTTTTACAGGTGTCATAAAGGGCACACTGAAAAGACAGAAAATGAGCATTAGCAAGCACTGTTGTCTTATTACAAATGGGGATTTAATTTACAGTTCATATCGACCATAGGGCCTCAGACAGAGCAGAGCTTTTCAAGAATCATGTTCTCGTCGCCGTCGACAATCTTCAGAGCACTCCTCACGATGTCTTCAGGGAAGCCCATTTAAAGTTTTAAACCAACTTATGCACATGTGGTCACAGTCACAGATAAGTTGTACTCCGTATATCCAATGGAATAACAAATACTCCGTATAACTCGGTAACAATACATTTTCTTCCATACCGACGGAGGTACTCTGCAAAGGCCTCTATCCAGTAGCAGAAAATATGGAATAGTCACGCAGGTACCAGCTCCAAGTGCCATCATTGGTCCACACTGTAGCTCTAGCCATCATGTTTTCATCTCTACCTTTTCCCAGCAATTTGAGAAGCTATGAAACAAACAGCTAGAGCTGCAAAATTTCTCCATTACAAAGCTTACCAGAGCCCTGACCAATTTTATATCTTCAATCTCACATGAATACACCATGATGGATCCTCTATCATGCAACAAATGACCAGATCCAGTGTGGTCATCAGAAGAATGGAACAACGTCGATAAGACTTCTTGAACCAGATACACTGCTAGCCATTGCAGCCACAAACCGTAAGAGGCAGGGTAAAGAAAAAAGTGCATTCTTCTGAGACCAAACTGCCTCTTACTCCCTTCTTTTCCCCTTCCTCTTACAAGTCAAATTAAATGTTCACATGATAGAAAAGAAAAAAAAAAGGAGTACTTTGCCAGCACAAAGTGCATTCTTTTAGGCCTTAGCCAAAAGTCAAGTGAGCAGCCAGCTATATATGCAAAGTAGCAAATTAGTGACAAATCAACGGAAACAAATCTTAAACCAAAGAAACAAATGTAACTGCATCCACCAACATATCCTCCATTGTCATTCATCGTGCTGAAAAGAATTTCATTAGGATCAAAATCTATTCGAATCTTGTTGGTTGGTTTGTGCTCTCATCAATTGGGTTTGTAAAGTAGTTAAACAATGTTGTTTTCTTCTCTCTTGCAAGTTTATCAGTAAATAAAAAACTATTAAATAGAAGGCTCTGTTTCTCATTCAAAAGATAAATAGATTAGAGTCCAGAGTCTACCTAAATGCTACAGAGAAATAGGGAATACTCACTTATTAGTGCCATTAGCTGATTAGAAATAGCATGTGAGCACTTGAGTAGAGTAGCAGTAGCAGACCAGGACGCGACCATGCGCCCGTGCACTGGGCTGTTGCTAGCTGCTGCTGCGCCCGCACGCTGCGCGTCGACGCTGCCTCCGCGCGTCCGCACCGGCGACCTGCTGCCTTGCGCATGCTGCGACTGCGCCAGCTGCTGCACCGCCGCTGCGCACCCGCGTCCGGCCTGCTGCAAGCCACCACTCCAAGCCAAACCCTAGCCACCGCCAGATCTGAAGGTGGTGCATCCTCGGGTCGGGGCAGCGACGCTGCGACGGAGTGGGAGAGGGGCGATGAGACAGCAGGAAGCAGAGGATGGCGTGTTGTGGTGTGGGAGAGATCATCGCCGACGAGGAGAAGCAAGCCAGGTGGAGGGAAAGACCGGGCGGCGGCTGTCGCCCGTCGCAAGGAAAGAGGAGAGAGCGAGAGAAGGAGAGGGGAAAGGTAG

Coding Potentia
Explanation CPC Score
noncoding -1.08741
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0421900.2 8 26432855 C G
Osa08LNT0421900.2 8 26432897 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0421900.2 osa-miR5540 Cleavage 5.0 16.848 1 21
Osa08LNT0421900.2 osa-miR5791 Translation 4.0 8.951 1 21
Osa08LNT0421900.2 osa-miR156j-3p Cleavage 4.0 17.555 1 22
Osa08LNT0421900.2 osa-miR1320-5p Cleavage 5.0 24.738 1 21
Osa08LNT0421900.2 osa-miR2919 Cleavage 3.5 20.23 1 19
Osa08LNT0421900.2 osa-miR2928 Cleavage 4.0 13.326 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0421900.2 8 Grh5 Resistance or Tolerance Insect resistance nan nan
Osa08LNT0421900.2 8 nan Physiological trait Source activity RZ66 RG598
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus