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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0422500.1

GGAGAGAATCCAGTACGGCGTGCAGTGGCAGCGTCACGTCGCGTACACGACGACACGACTCACGCCATCGGATTCTTCTCTTCTGGACTTGCCCGCCTTTGCTTTCATTGGTCCAGTAGTACTCCAGTCTCTTCTCTATCCATTGGATACTTCAGGAGAATGGAAGCTAGTCCTAGTTCGGTCACTGATGCCAAATAGAGTACCACCAGCAGCAGAACATTCTCAGACACACGTTATCATCAGTACTGTACTATTACATCTCACTACTGATAATAATCCACTGGGTGAAATTCAACCATGCTGTCCTTACGAGTACAAGTATGTCGGGTAGGAGGAGTAATTGTTTCAGAAATGGAATCCAAATGGTCACAAGAGTTCTGAACCATTAACTTTTAGCTTAGTTTGTAATTTGGAGCATATGTTAGTTAAATATACCCTCTGATGACTGTATCAAACTACCACCAAAATGTTTCTGCGTTTGTTCAGGTCACAAGCAAATTAATATACAGGACGAACACGGATTCAGGGTTCAGTTGGTGGATCCCTGGGTTCTGTGCGGCTAGGTTGTTCCAGGTAAAGCTGCATCTTCACAGGATCACAGCTCATGGACTTGATTGGGGTTATCTGTGGAGGCTGCATCCACTGTTTGGTGTCTGTAGGGATCCACAGCTGAGCTTCCTTCTCACCATCTGGAGGGAGGGATCGGAAGTATGCAGCGATCTCCCAGCTGCCATCTGATGGAAGGGTTCTAGTAAGGGGTTCAGCAACAGCCAGTTTGATCAAGAAAGCTCGCAGAGCGAATTCCAGGCTGGCCTCCTCTATCTTGGAGCCATAAGATTGGTTAACTGCAAGCTTGAACACAAACTTCTCAACTGGCACATGCGCTTTGTCGTAGAAGATGACTACAACCCTCTCAACCAATCCCTTCTGAATGAAAGGGAGTAGGCCAGAAGTAGCAGAGTGGATATAACCGGCAAGTTGGGGGTGCACTGCTTTCTGGACCACTACATTCATATACCTTCTCCTCTCAAATGCACGAGGAGGATAGAAGCCTTTGAGGAAGACAACACAACTGACAGCTACCTCTAGAAAATCCACAATCACTTGTGCTATTTGACCTTGTGGAGTTTGATTTTTCCTGTCCATATGGTTCAGTTCAGGCGAATTCTGGTTTGTCACAAACTTCTATTGATTTATGCCCCTATGATTGGCATAATCCACCAGCCAGAGGGCATATTTGAAACTGCACCAGATGATTCAAAGCATAGAAAGAAGAGTTCAATTCTAAATCAAAAGATCATTAGATAAAGAGCAAATGAAAAGGAACAAGCAAATGGCAATAGCTATATTGAGTGTTTGTATACGATGAGAGCTTGCTAGTTTCATTTAGCCCTTGCAGCACATCAGACTCCCAGTCAACAATAATGACTATTATGTAGGGCCTACCATATTTTGCAAAACATGAAACATGAAAAAATGACATTCACACTTCTCACCGATAGTAGAACGAAACTATGGCCAACATATCATCTTATCAG

Coding Potentia
Explanation CPC Score
noncoding -1.24654
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0422500.1 8 26929564 C G
Osa08LNT0422500.1 8 26929760 G A
Osa08LNT0422500.1 8 26930606 G A
Osa08LNT0422500.1 8 26930671 T C
Osa08LNT0422500.1 8 26931279 A G
Osa08LNT0422500.1 8 26931334 G C
Osa08LNT0422500.1 8 26931704 C T
Osa08LNT0422500.1 8 26931845 T C
Osa08LNT0422500.1 8 26931428 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0422500.1 osa-miR167d-3p Translation 4.0 14.325 1 22
Osa08LNT0422500.1 osa-miR1870-5p Translation 5.0 14.928 1 24
Osa08LNT0422500.1 osa-miR5160 Translation 5.0 22.712 1 22
Osa08LNT0422500.1 osa-miR5340 Cleavage 5.0 15.111 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0422500.1 8 Grh5 Resistance or Tolerance Insect resistance nan nan
Osa08LNT0422500.1 8 qRGV-8 Physiological trait Germination/dormancy RM502 RM477
Osa08LNT0422500.1 8 xa13 Resistance or Tolerance Bacterial blight resistance nan nan
Osa08LNT0422500.1 8 nan Physiological trait Source activity RZ66 RG598
Osa08LNT0422500.1 8 qPGWC8 Physiological trait Eating quality nan nan
Osa08LNT0422500.1 8 Grh5 Resistance or Tolerance Insect resistance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus