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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0422600.1

CTGCATTTCTTTAGAGTTCTCTTCGAAAATAAATCGTAGAGAACACATTCACAAGAGAAATAAATTACTTAATTACAAAAAGTCTGATCTGATAGTTGATCAGCTGGTCGTTTGGCTTTTCTGAAGAATACAAGAAGGCACGACATGCAATCAGCTCGGTCACCGGTGGGGTTCGGAGTTTTATTCTCCGACCCCCGGCAGTCACGAACATTCTTCACTTTTTCTTTACAAACAGGAAACTAAACTATAGCTCCAGCCTCCAATGGTGATGTTTGATTGCTCCAATAGTGATGTTTGATTCAGCTGATGGCCTCGCCTACCAGAAGAAGGCGCAACATGCAAACGGGATAATCGAACAGCATACAGTACAGGCATCCAACACACTGATCCTTGCAGGCGTTTGCACAGCGGAGAGGCATTGGAGGAGGGTCGGCTAATGGTGAACACTCTCGCTGAATTTTCTATTGTCTGCTCTTAATTAATTCCTTGCACTGAAGACTATCCGGCACTGAAAGAAGAAGGAAAAAAAAACTAAAATCTGACTCGATTCAATCAACGAGGGAATACATTCAGAACTCAGAAGGGAACTCCACAAAAAGGAATTCAGACATAGCATGTCGTCATTGAGTGATTAGGGAAGAGAGAAATACTGATCAATGTGATGACTGAACAGAAGAAAGCATGACATGCAGTCTGCTCTGTGATCGTTTGGGGTTCGGTGTTTTCTTCTCCGAACTCCCTAACAATCGGATATTTCTGTGGCGACTTGTACTAATGTTTTACAGGCTCATGAAGAAGCCCAATAGCTGAGTCCAATAATTTCCTTACCGCGTCCTTGGGTAATTTAGGCAGTGGCGGACCCAGGATTTGAACCTAGGGTAGGCCTAGCGAAAAAAATCTAAATGCAATACATCATGATTCGATATAAAATCTGTAAAACGATACGGGTATATAACTCTAAATAGTTCAATACAAGTAGAAAATAATAAATAAGTTTAAAATTTACCTAAATGACAATGTAAATTGCCCCTTCATCAACTTTTTTTGCTTCATGCTTCTGAAAAAGAAATACACTGCTTGACTTCTTCATTCCTCAATCTCCGGAGGGGGAGGGCCGCCGGATGCGGGATGCCGGCCAGGCGGCGGGCGCCGAGGCAGGGCGCGCGCGCCGATGCGCGTCGGGGAGGCCGGAGGCGGTGCGACCGCGACGGCGCGAGTCGG

Coding Potentia
Explanation CPC Score
noncoding -1.35728
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0422600.1 osa-miR160f-3p Cleavage 5.0 14.695 1 21
Osa08LNT0422600.1 osa-miR408-3p Cleavage 4.5 21.505 1 21
Osa08LNT0422600.1 osa-miR1853-5p Cleavage 4.0 16.993 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0422600.1 8 qPGWC8 Physiological trait Eating quality nan nan
Osa08LNT0422600.1 8 Grh5 Resistance or Tolerance Insect resistance nan nan
Osa08LNT0422600.1 8 qRGV-8 Physiological trait Germination/dormancy RM502 RM477
Osa08LNT0422600.1 8 nan Physiological trait Source activity RZ66 RG598
Osa08LNT0422600.1 8 Grh5 Resistance or Tolerance Insect resistance nan nan
Osa08LNT0422600.1 8 xa13 Resistance or Tolerance Bacterial blight resistance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus