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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0422900.2

GATCACACTCACTCACTCACTTGACATTTTAGCCCCTTTTTTTGTAGAGATCAATATACACTCAGAATTCAGAAAAGAAAGAAAGAAAGAAAGAAAGAATTGGGGAGAGAGAGGAAAGGAAGAATGACAATTGACATGCACCATGAGTGACCAAAGATGAACATGCAAGAAAGGCATAGGTACCGACCGGCCAATGAACGTGTACACACATGCGGCCAGTGTGGGCCCCACATCGTCTAGAAGAGCTCCCACTCGAACCTCGGCGACGGCGAGGTGGTGGTGGTGGTCGCCGGCGCCATGGTGGTCACCGGGGCCGACGACGTGGACGGCACGGATGAGAGCAGGTCGAACGACTCCCAGCTGGCCGTCGCGGTCTGTGGCGCCGGCGCGGTCGCCGTGGCGGGCGCCGGCGGCTGGAACTGCCGGCGCTGCTGCTGCTGCGCCGGCGGCGGCCGCGGCGGCAGGTGCGGCGGCCGGGCCTTGGGCGGCGCCGCCGCCGCTTTCTTGGTCTTGGCACGGATGGCGTCGAGGGCCTCGACGTACTTCTGCACCCGCTTCTCCTGCACTCGGCGCTGCTCCTTGACCTCGCCGTCGGCGGCGATGGAGTCGAGCTTGACCAGCTCATTCATCAGCGCCTCGGTGAGCGCCACCACGTCGGCGTCAACCACCCTCCCGCCCTTGCTCACGATCGCCTCCAGCGCCGACACCTTGGAGGCGAGCTTGTCGACGTCGAGGGCGACGCGGGAGACGGACTTGGCGGCGCGCTCAGCCTTGCAATGGCGGCGCTCCTCGAGGAGGCGCTTGGCCTGGGCGGTGGGGTCCTCGAGGAGGAGCATCTTGGAGCGGTCCTTGACGCCGGCGATGTCGAGGAACGCCTTGGAGTCCCTCTCCTTGTCCCTGTACACCACCTTCTGGTCGTCGGGGTGGAGCCCCGTCTTCTCCGACAGGAGCTTCTTCAGCTCGCCGAAGGACGCCTGCGAGTTGATGTAGATCTCGTGGTACACCCCGTTGTACTTCACCTTCACCCGGATCGTCGGCACCGGCGCGCCGCCCGGCGGTGGCTCCGACTCCGGGCTCCGCTTCTGCACCAGCATGCCGCCGGGCCGCACCTCCCACACCTCCTCCTTCGCCACCGCCGCCGTCTCCTTCTTCATCGCCGGAAATTTCTGATCCTTCCCGCGCATCATCTTCTTCTCATATAGGAGTACTATCCTAGTAGTAGTTAATCCTATAATATACTCAGGAGCTAAAAAAACTTGCTTCTTCTTCTTCTTCTTTGATCAAATTAAGATCACCCAGCTGCCAGAGACTAGTAATCTAACTAACTAATTTAGCTTAGCTTTCCTCTGCTCTATATCTGCTTTGCTGCCGAGAGACAACCAAACAAAAAATGGAAATTTGAGCTAGCTGCAAGCTGCAATTGTGACCTCCAATTGGAGACAGGAATGAATCGAAGAAGGAATGGGAGGAAGAGCTAAGAAGAAAGGGTATGAGGAGGAAGAAAAAGACAGGGTACAAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.267786
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0422900.2 8 27357180 G A
Osa08LNT0422900.2 8 27358023 G A
Osa08LNT0422900.2 8 27358605 T C
Osa08LNT0422900.2 8 27358660 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0422900.2 osa-miR5819 Cleavage 5.0 7.899 1 21
Osa08LNT0422900.2 osa-miR444d.3 Cleavage 3.5 18.266 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0422900.2 8 Grh5 Resistance or Tolerance Insect resistance nan nan
Osa08LNT0422900.2 8 qRGV-8 Physiological trait Germination/dormancy RM502 RM477
Osa08LNT0422900.2 8 qPGWC8 Physiological trait Eating quality nan nan
Osa08LNT0422900.2 8 nan Physiological trait Source activity RZ66 RG598
Osa08LNT0422900.2 8 Grh5 Resistance or Tolerance Insect resistance nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus