>Osa08LNT0423000.2

CAACCACCCCCTCCGCTCGCGCATCCACCCCTCGCGCCCCTTCCCCCTACTGCCGCTCCCCGGCCGACGGCGGCACCTCCACCTGCGGCACCGCCGGATCGACGGGAGTCCCCGATCTTCCTCCGCCAAACGCCAACCTCGCCGCACAGCGCCCCCATCCCGTCAACCCTCTGGCCACCTGCGCCTCTCCACCGGTGATCTCCTCCCTTCTCACCCACAGACACCGCTGTTGATGCCCCGCCTATCGCCGACGCCCCACCCACCGCCGCCCCTCCCCGCTCGAGTCCATCCCTCGGCCAGATCAACGCCACCGCCGTCGCCGTCGCACGCATTCCTCCCCGTCCACCCCCGCCGCCAACGCCCAACCCAGCACCGCCCCTCCCCTCCATCCTGCCGCCTGTTCGCCGTCGCACGCTGCATCACCAGGATCTGCATCGCCGTCGCACGCCTTCCTCCATGACAATCTGTGCTTGCGACATTCATCAACAACATGTTGATTTGTTTGTCTGTCTGCTCAATGATGTACAGTTGACACCATTGTTTTCCTCGTTGCAGGATATATTGACTTGTTGAATTCCGCCATCGTCACCACATCAGCCCGGCTGCCATCTGGGTTTCTTTTGACCCGATGTGATGAACACATCTGAAGGAGAGCAGCAGAGTATTCACGTACATGTGGCAAAGCAGCAGATCTGCTATCCTTAATCGCTCAACCTGAGGCAAAACAATCAATACATTGCAGAAGTTTTGGTTCATTTCAGCCTTGGAAATATTTAAAGTTTGGATATCACCAAAGATCACATACTGCCATACTGGAGATTGCTTGACAACGTTCGTTGCAGCAGTTTGAGAAGTGATTTTCCACGCACGCATAACGAGGAAGTGTTTCGGGTTCTGATGTTGTGCAGTTATGTACAATAGTAACGAGAAGATGTTGTGCAGTTATGTCTTGGAAAGTAAACAACTTTCTCCTCATTATGAGAAAATAAATATTGTTTACAGTGCTGGATCACTGAACTTCAACAAACCATTTTTATGTGATCATTGATTCAGAAAAACAAATGAGTTTGAATGAATATTTTTCACTTCAATTGATCACTACTTTCTCAAAAAAGAAGTGAGGTAATGACTCCAGTTTTTAGTTCTGTGTTTAGAATGTATGTCACCTAGGAATTATTTGAGGGACAATATTTTGTCAAGCTTAAAGATTGCAAGGGCTATGGTGCTTTAAGGTGCTGAGATATTGCACACCCCATGATAATTTGCCTCGACTTCCATGAACACCGGGAGTGTGTCTGTGTCATGCAAGGCCATGTTGGCGCTAGCTTGGTACTGTTTTTTTTTCTGCAAACCATTTGAGAATAAATTGTTTGAAATGATCTTATTCCAAAGGATCCAAGGTGGCATTAGAGAAGCATCCTTTTTAATTTCCATGCTGAGAATTTTTCTTTTCATCACAATTGATACATATTACCTTGCAAAATAACATTTTATCTTGCACTTTAAGGTTGGTGAGAATATGGCAAATCTTTTCACTTATAGCTATTTTCACTCAATTGCCAGCTACCAGCTACCAGAGCATCACCAACCTCCAAGTGAAGAATAGACAAATTACATGGCAATTGTTCCACTTTGTTAAATATTAGTGACACATGTTGCAAGATCTTAAGTTATTTTATTTATTGAACCTCCTAGGTGTTACCACAATATATATTGATGTATTTTCA

Explanation	CPC Score
noncoding	-1.02671

Transcript ID	Chromosome	Locus	Ref	Alt
Osa08LNT0423000.2	8	27373701	T	G
Osa08LNT0423000.2	8	27373802	G	T
Osa08LNT0423000.2	8	27374474	A	T
Osa08LNT0423000.2	8	27374511	A	G
Osa08LNT0423000.2	8	27374698	C	T
Osa08LNT0423000.2	8	27375325	C	A
Osa08LNT0423000.2	8	27374761	C	A
Osa08LNT0423000.2	8	27374785	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0423000.2	osa-miR1437b-5p	Cleavage	4.0	18.685	1	21
Osa08LNT0423000.2	osa-miR159d	Cleavage	5.0	23.05	1	21
Osa08LNT0423000.2	osa-miR2928	Cleavage	5.0	19.203	1	20
Osa08LNT0423000.2	osa-miR5523	Translation	3.5	15.33	1	22
Osa08LNT0423000.2	osa-miR5523	Translation	5.0	14.688	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0423000.2	8	Grh5	Resistance or Tolerance	Insect resistance	nan	nan
Osa08LNT0423000.2	8	qPGWC8	Physiological trait	Eating quality	nan	nan
Osa08LNT0423000.2	8	Grh5	Resistance or Tolerance	Insect resistance	nan	nan
Osa08LNT0423000.2	8	qRGV-8	Physiological trait	Germination/dormancy	RM502	RM477
Osa08LNT0423000.2	8	nan	Physiological trait	Source activity	RZ66	RG598

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus