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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0423700.2

TCAGGAGATTGATCCAGGGCAGAGTTTCTCTTCTGAATACTCTTAGCTCATAGGCAACCTGAGCTCCAATACCCTGTGATAGGCCTCCACTTTTTAAAGGATCAGTCGATCACAACAATTTTGCAACATGTATAGTCTTGTGGATATGTATACAAAGTTCACTAAATTAAAAAGAAAGAGAAGCAATTTTGTCAATTTCATGCTATGAGTCTTTGGTATTATTCACATCATGACTGATTGACGTTTCTCATAACTAAAATATAGGTATTGTGCCTCAAACATACCATCCATTTACAGGGCAAAAGAACAACCTAAGATCCGGGCCGTTCCAGCCAAGTAAAATTTTGTGCCTCTTATAATTTTTTGATGTTAAAACAAAAGTGACATGTCTCCATAAGGTTATCAACTTGTTATTACAGCCTTGCGGGCTTCACGTTAATGGTTTTTTTTTATGGGAACAAAGGTTATGTTAACTCACATGTTCCTCTAGCGGAAGATCCTTCTGAAATGGATCTTGCTCTACTCAGCTGAAACATGCCAGCTCCAACACACGAGCTACAACCCGGTAATTAGCATTATCATTTATATTTACTGATGGAAACACCTACTAATGTCAAAGAGCAACAAGAATTGAACTAATACACATGCACTAATAATACTCAATTAAGAACCTGTTAATGGTTTTCCTTGCATTTCCCTCAAGACCCATCGTGACGGTTGGAACAAATGCAGATTCTTGCTACCTCCGGCGGGAAGCAGGCTGCGGGGGCTTGAGTGCTTGACCCTGCAGATCGCCGGCGACGGCGGCCGGTGGCCCTGTGGCGGCGCCGCCGCCGATGCGCCTCTCGTGAGTTTTTTTTTTTTTTGGTCTTTTATTTCGTTTTATT

Coding Potentia
Explanation CPC Score
noncoding -1.25084
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0423700.2 8 27645952 T C
Osa08LNT0423700.2 8 27646342 T C
Osa08LNT0423700.2 8 27646573 T C
Osa08LNT0423700.2 8 27646663 G A
Osa08LNT0423700.2 8 27647969 A G
Osa08LNT0423700.2 8 27648123 T C
Osa08LNT0423700.2 8 27648180 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0423700.2 osa-miR1442 Translation 4.5 15.137 1 20
Osa08LNT0423700.2 osa-miR2105 Cleavage 3.5 18.603 1 20
Osa08LNT0423700.2 osa-miR2105 Cleavage 5.0 13.52 1 20
Osa08LNT0423700.2 osa-miR5494 Cleavage 5.0 11.863 1 21
Osa08LNT0423700.2 osa-miR5504 Cleavage 5.0 13.593 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0423700.2 8 nan Physiological trait Source activity RZ66 RG598
Osa08LNT0423700.2 8 Grh5 Resistance or Tolerance Insect resistance nan nan
Osa08LNT0423700.2 8 qPGWC8 Physiological trait Eating quality nan nan
Osa08LNT0423700.2 8 Grh5 Resistance or Tolerance Insect resistance nan nan
Osa08LNT0423700.2 8 qRGV-8 Physiological trait Germination/dormancy RM502 RM477
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus