>Osa01LNT0039000.2

GGAAGTAAATTCCAATTTTCCAATAGATGTACGTCAACCCTTTGCTTCCTCTCCAGCTGCAGAGTTGCAGGTTTGACGAATGCAGCTTATCTACAAAATTCCCATCAGAGGGAACACAGTTACAGAAGAACTAGGGGAAGTACAGATTGCAAATCCATAAGGATCTTCTTTAGAACCGTATACGTAAAGGGCTTCATGGATTGGCCACTATATATGGGTGTCACCCTCAATCGTGAATCTGCAAGGTCAGATATCAGTATATCAAATGCAGATTGCCTCATTGCAGATTGCTGTGGATTGTTCAGGTTCCGGGTTAGCCCAGTCACCAGTCTTCACTGACATTAGCCCGCTGTGGTTACATCAGATAGTAACAAGCTCCTTCATCATTTCGGAATTCAGTCGGTGGTAAGGCATCGGAAATGGCATCAAAACAACTCTTGCTGCCTACCTTTCAGCTATCCGTGCTGCCATCATCGTCATCTTCATCCCCAGAAGCTTCATAACGTGGCTGATCATACTTCTCACGAAGCTGCTTGATAGGAATGAAGTCCCCAGCAGTGTCCTCGCCAAAAAACAGAAATTCAATATAGGGGTGATCAAATCTTCCTTTCTCTGATATTTCAGCTTCTGCAAGATTTTCTTCTGCAACTGAAATTACACAGACATAACATGTCTCAAAATGGCGCAGCATAGGCATAAAACAGTAAGTGAAGATGGATTTGATCAATTGACTACTGCATAGCCTACTATCTTGCCTTCTTCATATGCAACAAGGAGTTCTGGATCAGCATATACATCAACAAGGACCTGCAAGATTTCAGCAATGAATCACAGAGGATCACTAAGCATCTCAATTCTCAAAAGACTAAATTATGCAAACACATCAGTAATTCAGTATGCATGGGCACTATCGTCCAAAAGAAAGCATTAATTGCATAGAGAAACAGTCAATTGCAGGCTAATAAAATTGCATCATGAACGGCCTGATTATACCCAAAAAATCCAAAAGGGAGGAGAAAAAGGCAATGATGAATATCACCATCTCAACTCCATAAGTGAGTTTGCAAATTAAGAACAAGAACAGGTAGGTATTATTACACATAATCGCCATCCATGATAGATAAGTCACAACTGATGCTACATGAAGGAAATGATATTTCTATGAACTATGGGCATTGAGGAACTACTAAATCGGAATAAGTCAAGCAGCATTTACTTGATAAAAAGGTTGATTCGGTCCTTTGGACAAGTTTTCCACATTTGCTGTCTCCATCCATGACTTGGATTCACAGCACACAGGATCCATGCCACAAATCACAGCTCTATATCCTTCAGCAGGTGATGTTATCATGTAAAATTAAGAAGAGAAACTAAAGTGTGTTCACTGAAGTTAATATTTGATATAAAGTGTGCTTCAACACATGCAAATGTTCCATTTAAGGATAATGGCAATTATGAAAAATTAACTTTTCATATAAAGTTTGAAAAGAAATTGTAGTAGTTATCCATTTTCTGAACAGCTTCAGAAATAATGTGTGAACAACAATACGAAGTAGGTAGTATAGCAGTACTCACCGTGTACCTTATGACGTACTTTCTGCCCTAGTCGAAATGCATATTCCACATTTTGATATGCAAGGGCCTTAGCGGAGACTGCCAGAGACTCTGTCTCAAGTTTAGCAATTTCATCACGCAGTGCAGCTGCCAAAGCATAATTTTCACTGTCAACAGCCTTTTGCAAATCCGCACGCACGCGTAAAAGGTTTATAGCTTTGTCCTGAGCTTCAGTCTTTGATGAGCCTCTTTTAGCTTCACGTTGCCTAATTATCTCTGTTTCAATCTCTGTGAGTTTTTCCCTCAATTGTTTTGCCACATCAAATTGCTCTATATTCAATGCATACTGTATTCGGGTTTGTAGGTCCAATTGGAAGTAGAAGATTAAGATGTCTTCGTTAGCAGACTCACTGCGTTCCAGCCTTGCATTACTACTGCTACGGTCATCTCCTCCAAATAGCCATTTAGCGTTAGTTCTCACTGTAGTACCCATTTGCCTTCTATTGGTCCTCATATGTAGTTTTTTCACACACCAACGCCATGAGTACGCTCCACATGTTATTGAATTTATTTTGTAAAACAACCTCAGATCATCCACTGCAAGACAAGCTGGTCTAAAACATGATCCATGGGGCGAGGAAATTGAACCACATGCAAAAATGCCTTGCATTGTATTGGTATGAGATTTGACCAGTTCAATTCCCACAACTGATGTAGTCCAATCACCACACTGACAGTTGCAATCAGCAAGCCAGTGGCATCTCCAGCTTTTCTGGCCGAGGCGGCGCGCGCTTCGGTGGGAGGAGGAGGCGGGGAAGCGTCGACGAGTCTCGGCGAACGGGGAAGAAAGGGGGAGGGCCGCGCGCTTCTCGGCCGTAACTACCACTGGCTCAAAGTGTGGCGGTCGTCGACGGGATACCGGATAGAATGTGTGACCTGGATCAGGAGTGCATCGACTGCAGGTTAAGCACTTGGGTGAAACTGACCGTCCAAGAACCAGCGAACGTTTAGGATTCTCTGACCTCGCCTTCTCCTTCCCTTCCCTTCATCAAGATTTGGTTACAATTTTGGGGCAATTGCATCTACGCCCCCACTTTCAAACCCAATTGCTGTTTTATCTTCACTTTTTAGGGACATGTATACCCTCTGCATCCAGCAATATCGTGCAGGGGAGGACCTGGAACAAGGGACGGGGAGGAGGGCGCCGTAGGCGCCGACGTCGACGTCGAGCAGGATGGGGTCGTCGCCGGCCACGGGAGCAGTAGCAGCAAAAGCGATGGTGGGGGCAGGCGGAGGCGGGGGCTGACGACGATGCCTCGGCGTGGAAGCCAGCGGCCACGGGAGCAGCAGCAGCAGCCGCCGCCGTCGCCCGCACGCCGTTGCCGCGCGCACGCCCTCGCCGCCGCCCGCCCTCGCCGCGGCTGCC

Explanation	CPC Score
noncoding	-1.28688

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0039000.2	1	32179202	A	G
Osa01LNT0039000.2	1	32178674	C	T
Osa01LNT0039000.2	1	32179117	T	A
Osa01LNT0039000.2	1	32179615	G	A
Osa01LNT0039000.2	1	32179648	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0039000.2	DTM_#DNAt_MULE_japo_Os0709	Chr1	-	32181320	32183575	356

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0039000.2	osa-miR5530	Translation	5.0	15.15	1	21
Osa01LNT0039000.2	osa-miR5796	Cleavage	5.0	16.613	1	21
Osa01LNT0039000.2	osa-miR166g-5p	Translation	4.0	14.138	1	21
Osa01LNT0039000.2	osa-miR166g-5p	Cleavage	5.0	20.589	1	21
Osa01LNT0039000.2	osa-miR417	Cleavage	4.0	17.576	1	21
Osa01LNT0039000.2	osa-miR417	Translation	4.5	19.86	1	21
Osa01LNT0039000.2	osa-miR1439	Translation	5.0	15.993	1	21
Osa01LNT0039000.2	osa-miR1854-5p	Translation	4.5	18.623	1	21
Osa01LNT0039000.2	osa-miR2093-5p	Cleavage	4.5	11.016	1	20
Osa01LNT0039000.2	osa-miR5082	Cleavage	3.0	18.545	1	24
Osa01LNT0039000.2	osa-miR5500	Cleavage	3.5	13.709	1	22
Osa01LNT0039000.2	osa-miR395u	Translation	3.5	9.413	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0039000.2	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0039000.2	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0039000.2	1	qLRC-1	Resistance or Tolerance	Drought tolerance	RM237	RM302
Osa01LNT0039000.2	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0039000.2	1	gpy1	Others	Others	RG541	RG101
Osa01LNT0039000.2	1	An10	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0039000.2	1	qCC-1	Physiological trait	Source activity	RG541	RG101

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus