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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0424000.1

CATATAGATCATTCATTGATTCATTCCATTCATATATATCTCTCATCAGATAATAATGTTGCTATGACAAAAAGGGCACAATCTTCTACTCCGTACAGATCAAAAAGATCACCCTCCAAAAAAGGCAGTTATACCTCACCCAGCAACTGAGTTCAAACGGCACAAAAATTTCTTGCCTATCATGAGATTGCATATGGTAGAAACTACGCGAAAACTAACATTTGTCTGGTGTTACTTACATCCCCCGAAATAGTCACATGGTTTTCCTCAGTTTAGTTCCAAAAGGTAGTGCAGGTGCATAAGGTGAGTAAAAGAAAGGAGAAACTGGACAGGAACTCTATCAGCAAGGCCCAAGTTAGTTCGCAACCTCTTCTGACTTCTCAGGCTTTGACAGGCGATACCACGCTATGGCACTGGCACCTAGAACACCAACAGCACCTGCGATGAGAGTGTAGTTCTTGTTCTTGACGGTCGACGCACCAGCAGTTGGGCCACCTTCGGCCTTCACATCAGCGGCAGGAGTAGATGAGCCTTGCTCTCCTGGGCTGGGACCCTGCAAGCATTTAGTATCTTGTAAGTTGCAACAACCAAATGATTAAAAGGTTCACAAATTCACAACCCACATAACAAGAAAACACAGCAAATTCATGGCCTGTAAACTCTACAGAATTTGGTAAAAGCAAGGCATGGCATAAACAAATTGCCTCTTCTCAGAGCAAGGGCAGATATTGAATGAAACTGGTATAAAAGTATAACACTATGATCAAAGTTTTGCAGGGCAAACTGATCTGTAGTTTTAAGCTGGGAATAAAATGGAAAGTAGTTATGAGAAACAGATATGCATGACTGCATACTTTTAAGTGGGGCAAAGATAATGTGCTTCACATACCTGGCGTGCAAGCTTCTCCAGCTTCTCTTGTTCCATTTTCTTGATGTAGATGTTCTCGGCAGCCTTCTCCTCGCCGAGCACCTTGCCGCCGGAGGAGAGGAGCCGCCGCGGTGCGAGCCTCGCCGCCAGCCTCGCCTGAACCCTGGAAGCCGCCGCCACCACCGCCATCGCCATCGAGCCGAGCGCCACGAGAAACCCTAGGAGACGCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCTGCTCTGCTTCTACCTGCTCTCCTCCCACTCTCTCGCTTTTCTTCT

Coding Potentia
Explanation CPC Score
noncoding -1.11636
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0424000.1 8 27969056 A T
Osa08LNT0424000.1 8 27968588 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0424000.1 osa-miR2275a Translation 4.5 10.728 1 22
Osa08LNT0424000.1 osa-miR2275b Translation 4.5 10.728 1 22
Osa08LNT0424000.1 osa-miR5076 Translation 5.0 10.094 1 22
Osa08LNT0424000.1 osa-miR5076 Translation 5.0 14.283 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0424000.1 8 qPGWC8 Physiological trait Eating quality nan nan
Osa08LNT0424000.1 8 qRGV-8 Physiological trait Germination/dormancy RM502 RM477
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus