\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0424200.1

CTTTATTCTTAAGCAGGGTGAGGTAGTGAGTAACAATGTGGACGTACAATACAACAACATTTAATGATTTTTAAATAACAAGGAATCTTGTATATATATGATCATGCATGGAGGGTGTAACAGCAATGTGGGAATGAATCAGCTAATTTTGTAACAATGTAATTACCAGGCGGTATCATCATCAGTCAATCAATAACAAAATCTTGAAAAGAATCAATAGTGACTAATATTAGAAGTCCATCCTCTAAAAATGTACTCCTGCTAGTGCCTAAGACGACAAGGTAGCAGGGATTGATCTAAGCTAATGACATGGACATGAGCTCCTACCTACCTACTGAATGAATGAATGGGTAAAAAGTATCGGTGTATGTATCTTGTGTATAGGGCAATAAACTTAACTGGTGTGGTGTGTGTGTGTGTAGTATGTGTGTTTTCTGGTGGTTTGGCTTACAATGGTGTTGAGATGGACAGTAGGAGAGGATGATTTGCTGGTGTTGGCCCGGTGGTTGGGTTGCTTTTGGGTTTTCTTTTTTGGAGATGGACAATGCGCATCTTTTCTTTTCTTTTGTTTGGACGCATCATCTTCTTCTTCTTCCTCCTCCTCCATCTGTTAATGGTGGTGATCGATCGAAGGATGGATGGATGGAGAGAAGAAGTGGAATCTGTTGGGATGAGCAATGCGAGTAGCAGATAGAAGAAGCCTTGCGTTGCTTACTTTTCGCGTGCTCCCTTGTCGGCATTGCCTCGCCAAGAATGCTTTTGCTTTCTTAATTGTTGGTTCTTTGCTTTGCGTTGCGTTACCTGGTGATGTTGATGACGATGACTCACGAACCGAACGGGGCGCGCTGGGGAATCCCCTTGCGCCGCCTCCCCTGCGGCCGTGCGCCGCCGTTCTTGCTGCTGCCGCCGGCGGCGGCGGCATCGTCATTGGTCGCATCGCCGGGCTGCACGGTGGCCCCGCGACCACCCGTCTTGGTGTCCACCAGCTTGCAACCGAGGGAGCAGAAGCGGAAGGGGTCGAGGAGGGCGCGTGCGCAGATCTGGCAGTTGTAGGGGGAGGCGGCGGCCTTGCCGGCGGCGGCTCCGGCGCCGCGTGGCTGGGGGCGCTCGTTGAGGAAGAGGACCTTGGCGCTGTTGATGACGTAGGTCTGGACGCCGGAGATGTCGAGGACGTCCTCCACCTCCGTCACCCGAACCACGTCGTGGTAGGAAGAACGCCGTATCTGCAACGCACCAAATTAATTCATTCGTTTATTGCAATAGCAATTCGAAGAGGATGCCTGACCTGGATGACTCGGTGGGATTGGTGTCGGTGGGAGCGGCAGTAGTAGCAGAAGGGCGGGGAGGGGGAAGGGCAGTCGAGGCAGAACATGTTGCACTCGTTCCGCGGCGACGCCGGGTGCGCCCCGCACGCCAGGAAGAAGCGCGTCGACAGCAGCGTCTCCAGCCACTCCGGCAACCTCGTCGTCCCTGCTGCGCCCTCCGACATCAATGACGCCGACGAATGGCAATGCCGGCACCGGCAGACGCAACCAGCAGCAGGAGAGAAAGCAAGAAAGGAAGGTAGAGACCAGTGTGGTGTGGTTGGTGCTTTCTCAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.349151
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0424200.1 8 28060459 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0424200.1 osa-miR5539a Cleavage 5.0 12.927 1 22
Osa08LNT0424200.1 osa-miR5804 Cleavage 5.0 20.566 1 21
Osa08LNT0424200.1 osa-miR5539b Cleavage 5.0 12.927 1 22
Osa08LNT0424200.1 osa-miR408-3p Cleavage 4.0 16.187 1 21
Osa08LNT0424200.1 osa-miR414 Cleavage 3.5 22.16 1 21
Osa08LNT0424200.1 osa-miR1846d-5p Translation 4.5 24.288 1 22
Osa08LNT0424200.1 osa-miR1863c Cleavage 4.5 11.408 1 24
Osa08LNT0424200.1 osa-miR1863b.2 Cleavage 5.0 10.206 1 23
Osa08LNT0424200.1 osa-miR5154 Translation 4.0 17.921 1 24
Osa08LNT0424200.1 osa-miR5155 Cleavage 4.0 16.03 1 24
Osa08LNT0424200.1 osa-miR2099-5p Translation 5.0 14.546 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0424200.1 8 qRGV-8 Physiological trait Germination/dormancy RM502 RM477
Osa08LNT0424200.1 8 qPGWC8 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus