\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0039100.1

TGATAAATATAAGCATAAGCTAAAAGATAAGGCCGGTAGTATCTATTTGAACTTTGTGAACATCTATTTCATTTGCTACGGCACAAAGTGTATGTGCTAGAACATATTTTTCTTTATTTCTTCATTAATTTCTTATGGCACAGTGGCATGATAGATATCTTTGAGCCCTCGTTCTTGACAGTACTCAAAACCATATAGTTTTTCCTCTCTTTCTGCTTGAAAATGCCATCGATCGATCTATTGTAGCCGTTTGTTCTCACCAGCCCTTCGAACGGCAATTTGAAGCCTTGGTTCAAGATTTTTCAATAGTTCTTCTCCCGAAAATGATAGGCCAAGAATTCTATCTGGAAGATCGTATGACGGTTCCAAGCCAATCTTCTGAGCTCGTGTCCCCTTTTAAGGCTCTCAGTGAATGTTCTGTACCAACCTTTGTAATATACACATCAACTCCAAGCCTAGCTATCGCAGCAGCTTCCAATATTTTGGTCTCCATTCCGCCAGTGGTGTCATGTGCAGCTACAGATATCTCCACTCCTTTCTTGTTGCCTTTCAATGCTGGTTTTACAATCGACCAGCTGCCATTTTCATCCACCGCTATCTCTCTGAGAAGTACTGCATTCGGGTCTGATGGAGGACGATCAAATACTCCATGGACATCTGTCAGAAATACAACATATTTTGGACTCAGAAGCTGTGCAAGATGGCGTATAATGACATCCCCACTCAAAATGGTGCAGTCCAGCAATTCATCAAGAACAGCATCTCCATGCAAAACAGGGACAAAGCCAACATGGAGTGATAGCATGATTTGAGAAGCATCCACTGATTCAAGATTTCTTTGCTTAGTAGACCATCCACAAGCAAACGGTGACATCCCAACAGACGGTATTCCTTCTCTTGCAAGAGCTCTAACAATCTCCTGGTTGAGAGAAGTGACTGAAATTCTTGTAGCCACAAAGCCAGCCTTCACAAGTGTTGAATGAAGACCCCCTTTATGGACTCCAGATCTACTTGCTTGGAAGTGACCAAAAGACCCGGCACCATGGACGACGACGAAGTTGGAGTCGAGCCCCAAGCCTCCCATCTCCGACAAGCCCTCCACATCCACGACCGGGCCGGTCGGATCGCCGGGCCGTCTGCTCCAGTCCATCCCCACAACCTTCCCCGCCGCGCCGCCGTGGGACATGGCCTGCCGCAGCTGCGCGCACGCCGACCGCAAGCTCGCCGCGTCGATGCTCTCCAGCTCTCCCTTGTTCGTGATGGCCGCTCCACCGAGTTTGACGATGCAGCGGACGGGGCGGGAGGCGGCGGGGTCCGTCTGCTGCTCCTGCGCCGCCTCCTCCGCCATGGGAGCTTCCTCTCCTCGACCTCGCGCCGGCCAAGGCCTCGGGAGGGAGAGGCGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.757739
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0039100.1 1 32184545 C T
Osa01LNT0039100.1 1 32185233 A G
Osa01LNT0039100.1 1 32185264 A G
Osa01LNT0039100.1 1 32185420 C A
Osa01LNT0039100.1 1 32185950 T A
Osa01LNT0039100.1 1 32187111 A G
Osa01LNT0039100.1 1 32189738 A G
Osa01LNT0039100.1 1 32187578 A G
Osa01LNT0039100.1 1 32187928 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0039100.1 osa-miR167h-3p Cleavage 4.0 19.19 1 21
Osa01LNT0039100.1 osa-miR166i-3p Translation 4.5 19.409 1 21
Osa01LNT0039100.1 osa-miR2092-5p Translation 4.0 17.11 1 21
Osa01LNT0039100.1 osa-miR2876-5p Translation 4.0 15.619 1 21
Osa01LNT0039100.1 osa-miR2927 Translation 2.5 22.085 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0039100.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0039100.1 1 qCC-1 Physiological trait Source activity RG541 RG101
Osa01LNT0039100.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0039100.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0039100.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0039100.1 1 gpy1 Others Others RG541 RG101
Osa01LNT0039100.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus