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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0424400.1

GCCGTCACAAAGTTTTACAACAGTTCTCACCACATTCAGAAAACGTTCAGCTCGCCTTACAATCAATCCACACAGTTTGAGATAAAATTCTCAAATGTTCGGTCATCAAGTGCACAAAACTTGATAAACACCGTCAGCCATGTACTTTACGTGCAAGCAAGAGGAAAATGAAAGGCAGAGTCAGACAATTCTTCTACTTGGTTAGGTAGTATATAAGGAAGAAGACAGAAATGAAAGAAGCCACCATGGTAGCCATTCTGCGACTTGCTTTGGTCTCAAAAACCATCTTAAACTTGTCCACCGTTCCAGATAGAAATCCTCTGGAAGCATCCATATCATTACCCTAAATAGCAAAGAAATGCATTAGAGAGTAGTGACAAGAAAGATAGCATCTTGCAGGATATTAGTACCATTCTGTCCAGCATTCGGTTATGATTCTCCACTTCTTCATGTATATCTCCTGTCAATCTTTTGAGAACGCTGACCCTGTCATGCAGACTGTCCATAGCTTGGTCATTCTCATGCTCATGAATTTGAGAAGAGTAAGCTGAACTTCTGATCGCACCCTCCTCAATACCATCAAATAAAGCAGCTCTGTGGCTGCGGAAGTCCCTCCTAGAGTTCATGGGGGGAAGGAAGAGTCCCGGCCAACGAAGAAGGGGATGGAAAGCGAGAGAGAGAGACTGATGGATGGAGGAGCCGGAGATCTGCGCCGACGACGGAGACGAT

Coding Potentia
Explanation CPC Score
noncoding -1.14635
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0424400.1 8 28210123 T C
Osa08LNT0424400.1 8 28210659 C G
Osa08LNT0424400.1 8 28210980 C T
Osa08LNT0424400.1 8 28211672 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0424400.1 osa-miR5490 Cleavage 5.0 15.176 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus