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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0424600.1

GGATTAATTAGTAGTAGTTGATTTATGGGGTGTTTAGGAGAGAGGGGCTAAACTTAAAAATATAAGTCTCTAGAGTAGGGACTTATATTTTTAAAAAAAGGGCTAAAGTTTACTCCCTAGTTCCCAAACACTCTCTTAGATTAGCTAGTCGATCGATCGGCTTACTGTCCAGTAGGTGAAGAGCCTCGGCCTGTTGTCCCCATACAGCTCAGGGCTGACCTGACTGCCATCCGGCCTCGATGCTGTTGAGGTCGGAGCCGTTGAAGGAGCCGGAGAGGATCCAGAGCTGGGAGAGGCTGAAGCCATTGGCCTCGTCGATCTCCGGTGCCCACACGCTGATGGTTGCCCGCGCCCCGTACACCTCCGCCGCCGTGTACGCGATCGCGTGCTCATGGCCGTTGCCGGTGACGACGTCGGGCGCCGGCAGCGGGCTCCTCATCTGCTTCTTGCGGCCGAAGAGGGCGAGGGAGCGAGCGCGCTGCACGTCCGCGGCGGCGGTCCTGCGGACGGCCACCGTGCCCCTGGGGCAGTGGCCCGAGTGGTGCCACGTCTGCCACGCCCGCCGGCTTAATTGCTGGCGCCGGTCAAGGAGAGACGCCGACGCCGGCATCTGGGACGGCTGCGTCTGGACGGTGTGGTTGGCGAGGAGCGGATGGTCGAGCGCGCGCTGCTTGTGGCGAGGCACGCAGTCGATGATGTCGCCGTCCGCGCTGTGGATGGACCGCACGCCCGGCTTGTTGATCCTGTCCAGATGCCTCTGGACCACGTGGCGGCCAGCAGCGGCGGCGTCCACCACCGGCGCCGCAGTGACGACGACGAGTAGGAGGAGGAGGAGCGCAGCAGCAGCCACTGCTAGCGGCGGGTCCGACGAGCAGCACCGCTGCCGGCGCCACCGCCGCCGCCGCTTCGCCATCGATCTATCAGTAGATAGAGAAGAGAGAAGGTCAGCTCGATCGTTGCTAGCTCCGACCGCGAGCGGGGATCGGATGCGTGGGGGATGGGCAGCCTGCTGCTATAGTAATAGCATGGGGCATGAGCAGAGGAGCTTAGCTACTGACCTCAGCTAGCTGAAGCTCCTCCGGCCAGCCTCACCTATTTATTGCGCTTGCGCGCGGGCGAGTGAAATGAGATCCACTGCGTTGCGTTGTGTTCCGTTCGCCTAACCAAGTGTACTGCTAGTACTGTACTAGGTGTTCTTGAGAAATCCAAGCTAAATATACTACTCCGTAGGATCGATCGATTCGATTCGATGGGAAGGCCATGTCAATGCCAGGGGAGTCAATTATCTGC

Coding Potentia
Explanation CPC Score
noncoding -1.13308
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa08LNT0424600.1 8 28356211 G A
Osa08LNT0424600.1 8 28356443 G A
Osa08LNT0424600.1 8 28356537 A G
Osa08LNT0424600.1 8 28356602 G T
Osa08LNT0424600.1 8 28357087 T C
Osa08LNT0424600.1 8 28357216 T C
Osa08LNT0424600.1 8 28357513 T G
Osa08LNT0424600.1 8 28357907 A T
Osa08LNT0424600.1 8 28358360 A G
Osa08LNT0424600.1 8 28358918 T C
Osa08LNT0424600.1 8 28358938 C T
Osa08LNT0424600.1 8 28360199 A C
Osa08LNT0424600.1 8 28360879 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0424600.1 osa-miR6245 Translation 4.0 24.008 1 21
Osa08LNT0424600.1 osa-miR7694-5p Translation 4.0 14.522 1 24
Osa08LNT0424600.1 osa-miR1848 Cleavage 4.0 22.904 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus