\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0424700.1

GTCGCATTTACGGGATATGCATTGTATTACAACACGTCAAGGACATAACAACCTTCACATTTACTTGAATAAAAATGTTAGTCCTCTCTAATCGCATTGTAATCAATCATCAAAATCGTTAGGGGCCTAGATGCACTTTCACCTTTCAACAAAAGTTTGTTGCAGAACATGGTTTGTGACGAGATTTCGCTACATCTTGACGAAAGGGCCTCATCAAGGAAGCTGAGATATGTATAGTGGATCAAGTGCCTCGCTAGAAGTGTTTAAATATTTCAACTTTTTTACTACAACCACACAGATGTCATCCTAAAATAGTGACAAAAAAATTGGATGTTACATATTTCTTGTAGCCATCTCTCATGCACTATTCCCACATCTCATGTGCTGTCCTCATGCCACTCATTGTTTAATTTGTGTCATCAAATATATTTCCTTATGTATTATATGGTAAAATGTTTCTGAAATAAATAAAAATTACAGTAGCAACTATAGTACTCACAAGCCATTGTTTGTACCATCATGAATCAAGGCATGTTCCATTGTGTATACATAGTAGTATGGTTAATTAATGAAGTACAGTTCAACTAGATATGTCGCTATCTTTCACTAGATGCGATGTCTTGTATATGGAATTTATGTGTATTTCGTATTCTTTAAAAATCATGTGCCACCACGTGTGCTGCTTGGAGCAGCAGATCAATGATAAAATAAAGCTAAATATATGGTAAATTAAAGTTGGATGCCATTATGATCTTGTACTACTTGATGATCATCACCACTTTCCACACTTGAGGCTTCAAGACCTCTTTTGCATATGTGCTTCATCACCCAACATAGACCTCCGGCTGTTAGCCCTCTGAAGTAGGCCTTCGTGGAAACGAGTTGCCGTGTTAACGAGATCGTGGAGGGGTCCAACATGGTTCTTGTGGCGGGCCTCCTGTGAACGTTTTTCCAAGTACTCACCAACTTCACCGACTTCTACATGTGCAACAACCGTAGCTGCCAGCACTAGCGACACCATTAGTGCAGCAGAGATGTGCACATTTGTTGGCATCATCCTTGTCTCACTGTTGCATCGATCTCCTCCAACCCAATGATCGATTTTTACTCTCCACAACCTCAATATATAAG

Coding Potentia
Explanation CPC Score
noncoding -1.29788
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0424700.1 9 143446 T C
Osa09LNT0424700.1 9 143904 A G
Osa09LNT0424700.1 9 144095 A C
Osa09LNT0424700.1 9 144492 T A
Osa09LNT0424700.1 9 145178 T C
Osa09LNT0424700.1 9 145711 A G
Osa09LNT0424700.1 9 145726 T C
Osa09LNT0424700.1 9 145793 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0424700.1 osa-miR5802 Cleavage 3.5 17.83 1 24
Osa09LNT0424700.1 osa-miR5834 Cleavage 4.5 12.818 1 21
Osa09LNT0424700.1 osa-miR2871a-3p Cleavage 4.5 18.19 1 21
Osa09LNT0424700.1 osa-miR2871b Cleavage 4.5 18.19 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus