>Osa09LNT0424800.1

GCGCCCCATTTTCTATCGGGCAAAACTAAGTGCCACTACGCCTTGGTAACTTTGTTACAACCTACTTAGTAGTAATCAGTAATCACAAAATAGAATTAGCAAGCTCTCAGATGTTTCAAAATAGACAAGCATGAACCAGGAGCACAGAACATTGAGGACCAAAGGAGAACAAAAGCATTTGCACCAGCCTATATACTAATTCAGCCATCTTTACATTAATTTAGCAGCACACGGCCAATTCCTCCACCTTGGGGACAGCATGCTCCATCTCAGTCACTCCAGCTTCCTGCATGTCCTGAGATTGCTGAATCATGGGCAACTCGAAACAAACATATTTCCAGTAATCAACTAACTTATGGTCTGCAGGTACCACCTCTGTTGCCCTGCCCGCACAGAAGATTGCATAAGCATCAGCTGCGTACTTGCCAACACCACAAAGCTCAGTAATGTAGGTCCATTCTTCTTCAACATACGCCTTAGAGAATCTCTGGATTCTGTTTACTTTTACACGCTGCAAACCCAGAGGAGCCAGATACTTGGCCATCTTTTCAGGATCAGCACTAAATGCAGTTTGAGCATCAGGATATCGTTTGAAGAACCCCTTAACTTTCCTCCTCACTTGTTTCCCCTGTGTTAAGTTGAGGAGCATGCAGATGACAATGACCTTCCACGGGTCAGAAGCGTATTTTTCCTGCAGTAGCTTATGAGGGGAGCGTGGCGGAGGCACCAGCTGGTCCAACGGAAGGCGGCGGTATTTGTCTGACCTCTTTTCAGCACGGCTAAGCAGCGGTGCTGGTTTTCGTTCCTTGTTCACCCTTGCCATTTCTTTTACCTTCGTATTTCCTTGGTTTGGTCCTGATCTTGTCTTGAAGGTTGTTGTCTTACAGGTGCTGTTGATCTTGCAGGTGTGATTTGTCATGAGCTGAGATGAAGCAGATGATAGATGATCCCGAGGCGGCGGCCTGACTAGAAGGTCAGGCGTTCTAGGAAGTGGGGGAGTGCGATCTTGGCGGGTGGGTTTGTAGCAGAACTGGTCAAAGAAGGCGCCGAATGGCGAAGAATGATTGGGGTCCTGCTGGGTGGAATTGGAAGCCATAATAATCTCTGGGTCAAAAATGCCTTGAGGTAGTGGCTGGTGCTTCCTCAATTGTATCCTCATCTTGATGATCTCGCGGTTGCTCAGGACGCGGATCTTCTTGCAGCTACTCCTGCCATACGCTTCATCTCGTCCTCCGGCCAGTGGAGGAGGGTTTGCTTGTACCTGGATGCCGTGGATTTGGTCATGAGATGGTTGTCTGGGCATCAGCATCCGCTTCCGCTCCTTCCTCCTCGCCTCCGGGGCCGGTGGCCCCTCCCTACTCTTTCGCTTTTTCTCCTTCCCCACGCCCGCGGCCTCCTCATTCTTCCTCTTCCGCTCCTTTCTCCTCACCGCCACCGCCACCGCCTCTCCCGAGATTGGGGTTTCGGGGTTGGGCGGGGTCTCTTCAGCCGCCGTCAGGTGGGGAAAAGGTAACGGGGCCAACATCTCCTCCGCCTGCTTCTTCCGCTTCTGCAGAATCGCCTCCTCTGCCGCCGCCATGGGCAACTGCGCCGATGTGGAAC

Explanation	CPC Score
noncoding (weak)	-0.654655

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0424800.1	9	246229	G	A
Osa09LNT0424800.1	9	244526	C	G
Osa09LNT0424800.1	9	244641	C	T
Osa09LNT0424800.1	9	245696	A	C
Osa09LNT0424800.1	9	246048	T	A
Osa09LNT0424800.1	9	246541	A	G
Osa09LNT0424800.1	9	246747	A	G
Osa09LNT0424800.1	9	246885	A	T
Osa09LNT0424800.1	9	247021	G	T
Osa09LNT0424800.1	9	247251	T	C
Osa09LNT0424800.1	9	247700	G	A
Osa09LNT0424800.1	9	248215	A	G
Osa09LNT0424800.1	9	245532	A	G
Osa09LNT0424800.1	9	245572	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0424800.1	osa-miR5793	Cleavage	4.5	18.835	1	21
Osa09LNT0424800.1	osa-miR5795	Cleavage	5.0	21.673	1	22
Osa09LNT0424800.1	osa-miR5828	Translation	5.0	18.602	1	21
Osa09LNT0424800.1	osa-miR444a-5p	Cleavage	5.0	21.486	1	21
Osa09LNT0424800.1	osa-miR528-5p	Cleavage	3.5	17.676	1	21
Osa09LNT0424800.1	osa-miR1858a	Translation	3.5	23.566	1	21
Osa09LNT0424800.1	osa-miR1858a	Translation	4.0	8.14	1	21
Osa09LNT0424800.1	osa-miR1858b	Translation	3.5	23.566	1	21
Osa09LNT0424800.1	osa-miR1858b	Translation	4.0	8.14	1	21
Osa09LNT0424800.1	osa-miR1846a-5p	Cleavage	2.5	7.489	1	21
Osa09LNT0424800.1	osa-miR1846a-5p	Translation	5.0	24.164	1	21
Osa09LNT0424800.1	osa-miR1846a-5p	Translation	5.0	7.44	1	21
Osa09LNT0424800.1	osa-miR1846b-5p	Cleavage	2.5	7.489	1	21
Osa09LNT0424800.1	osa-miR1846b-5p	Translation	5.0	24.164	1	21
Osa09LNT0424800.1	osa-miR1846b-5p	Translation	5.0	7.44	1	21
Osa09LNT0424800.1	osa-miR1846c-5p	Cleavage	2.5	7.489	1	21
Osa09LNT0424800.1	osa-miR1846c-5p	Translation	5.0	24.164	1	21
Osa09LNT0424800.1	osa-miR1846c-5p	Translation	5.0	7.44	1	21
Osa09LNT0424800.1	osa-miR2868	Translation	4.0	15.968	1	20
Osa09LNT0424800.1	osa-miR5508	Cleavage	4.0	7.725	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus