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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0426400.1

TTTATGAAGGCATCAATGAAAAATCCACATTAGTACTTGAATAGATTCTGCATACATCAACCATCATGTCTCTGTCTGCATACACCATCATGCAAATTAATTGGCATGCAACCATGCATAACCTAAAGTCTCTACATTGCATCAATACTTCCACTGTTACTGCTGTGTACAATACAAAACTTATGAAAAATCAGCACATCCAGAATGCCTCAAAAACAAGGGTTAAGCATACCACCTGTGCAGCCACATTGCCTTGTCACCTCCTTTTCAGATAATCAGTTGATGGGTTTAACATCCCATCTACTCGGACGCTTCCTCTTACAAATCAATCTGGCAGGCTGTTCCTCGTTATCGGATTCACTTTCGTACTCTTCGATCCACCCATAACAGGGCCTCCTTGTGCCATATGTTACTTTGGCTTCAGGAAGGGGCAGAGTTGCTTCAACTGCAGGCAGGTCAACAAGCATGGGGTCCGCGTCCTCGACTTGTTGTTCAGTCTCAGCAGGCATCACATTGTGCACCTCTATGATTGACATGCTCTTGTCTTCCAATGGTGCCTCCTCCAATTGCTGTGGATGAGGGTGAGGCTGCTGTTGGTGATCCTCCTGCTCCTGCTTCTCGAAGAGCGCCTCCTGCACGACGCGGTACGAGTCTTCCTCCAGGAACGGCCACCCGTCGTTCCCCCCGTACACCTGGAGGAGTTCCTTGACGACGGCACGGACGTCGGCGGTGGCGTAGCCCATGGGGGTGAAGTGGTCGATGGCGGCGTCGATCCGGCGCTCCCCCTTCTTGGGACGCTGCCGGGGCATTGCAAAGAGCGGAGGAAGACGGCGCCTAAAACGGAAAGTTTCCTCTTCACCCCTCCAAACTCCAAAACTCGACAACCCAAATAGGGTAACCGAAAGAGAACCCCCACCTCCGGAAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.918876
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0426400.1 9 1169511 A G
Osa09LNT0426400.1 9 1170088 T C
Osa09LNT0426400.1 9 1170092 C T
Osa09LNT0426400.1 9 1170364 A G
Osa09LNT0426400.1 9 1170620 A T
Osa09LNT0426400.1 9 1170810 A G
Osa09LNT0426400.1 9 1170861 T C
Osa09LNT0426400.1 9 1171331 T C
Osa09LNT0426400.1 9 1171597 C G
Osa09LNT0426400.1 9 1171802 T C
Osa09LNT0426400.1 9 1171846 A G
Osa09LNT0426400.1 9 1171853 T C
Osa09LNT0426400.1 9 1171885 A G
Osa09LNT0426400.1 9 1172206 C T
Osa09LNT0426400.1 9 1172327 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0426400.1 osa-miR5819 Cleavage 4.5 24.37 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0426400.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0426400.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0426400.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus