© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0039400.1
ATATCAAACCATCTACGTTAACTTTGCTTCCACTTCGCACAACAGCAAGAGGTTACCAGGGCGCCCCCATCATTTTTTACACAACCACTTTACAAGTCGAAGAAGCAACAGAGGCAAGAAGATGGAAAACACAGTGGAGGATTCAGCTCAGCAGCGGCTTCCAAAACTGCCGCTGCTCACAATACCACATGCACACACAACTAGACACAAAGGCTTCCCCTTTCAATCCGAGAGGGGGGCAATGCCGAAAGCAATACAGCTAAAGTGATTATCTTTATAAGAGAGGTAACTGTCAGCCTACAGTTAGCTCTGTATTATCTATCAGAGGTGAAACTAATCTCCATCAAGTTATGAGGAAACGCCACAGCTTCTTCGCTGAAGATGTTTTCTCTTCCTCTTCCTCTTCATCTTCCTCGTCAGAGTCATTGTTGTCCTCAGGTCCATCTACATTAGATGTTTCAGTTGCAGACACTGTAGCCTCCACCGAAGGTTCCTCTTGGACAGAATCTGAATTATCCACTATTCCGTTCACGTAAGGCACATCAACAGATGAAGCTGGTTCTCCTGGTTTTGTAAGGTTCTCTGGCCCTTTATCGCCGTATTCATGTTCCTTGCAGGTGTTGGATAAACCAAGTGGGGCTTCATCATGTTCATTCTTGGAGCATTTCTCTTCTAGAGCTGACAGGCAGTTGGAAGTGATTTCCCCTCCATTAACTTTCTGAATAGTACTCCTTCTGTGCTTTCGTTTTGGCTCTAAAACTTCAGTTTGGTCACAAGAAACCAAATGATTAAGCCTCTTTTGACCAACTTTTGCAAAGTCCAAATTCACATCTTCAACATCCACAGAGTCTCCAACTTTCTTTGGCACACCATTCTGGACAAATTGATCATGGCTAGCGCTCTTCTCTGGAGACCGTTTGAATATCACCTGAGCACATTTTCGAACCCAAGAAATCGGTGTTGAGACTGGAGAAAGGTCTAGTTTCCTTCCAAAACGTTGCTTTGGTGAAGAATGGGAGTTATCATGATGATTGTCTTTCACATTTATATCACTTCCAAGCTTTGACTTATCATGTTGTAACAAAGACAGTTGCTTATTTTCAGAATCAATTTTCAGTTCTTCCAACACATTAAGTTGTTGAATTTGCACTGTAATTGCTTCTCGGTCTGAATGTAATAGTTTTCTTTGCTCTTGCAGCTTCTCCCGTTGATTATTCAAGGCTTCAATAGTGCCTTTTATCTCAGACAACTCTTGCTCTCTCCTCTCACGTTCCAAAGTAGCTTCTTTTCTCTCATCCTTAAGTTTCTGCAATTCAACTGCAACATGTTCTAATTTTGTGTTGATCATCTCCTTCTGAGAATTGATGTGTTCGAGTTCCTTGGCCTTTTTCTGCTCAAACTCTTCCTCCCTTTCCCTCAAATAAGAATCTATTTCCATCTGCCTTGCCTTAGCAGAATTTAGCAATTCCACCCTCTGGATATCAATGTCTCTCTTCAGATCTTGCCTTTCTTGTTGAATCTTACTCAGCCAACTTGCATGTTCTTGCTGCATCTTACTCATGAACTCTTTGTGTTCACGAGAGAGTGTTTCTGAATTACTTTTGAACTGAACACGGAGATTATCCTTCTCCTGTTTGATGATATCAGATTCATTCTTCAGATACTCAGTTATTGCTCTTCGTTCTTCAGCAATTCTGATCGCTTCCTTTTGTAGCTCCTCTTTCTTTTCATCAATCAGCTCCCATTCAATCTCAAACCTTTCCTTTTCGGCTTGCAGCCTATCTGCATCAGCCATGAGTTCCCTTTTTTGGGCTCTGAGGCTGTCAATTTCTTCTTTAAGTTTCATCTGCAGAGTAAGCAACTCATCTCTATCTGCTTGTGTTATTGCTAGATCTTGTTGGGCTTGAATTGCTTCCCGTTTCTCCTCTTCAAAGAAAGCCTTTTCCTTCTCCAAATCCGATTTAATCCTTTGTATTTCTTCCCTTTCTTTTTGAAGTTCATTGTGTATGGCTTCTCTGTGTAACAAGAGCTTTTCCTCCTCCTCTTTCAACTCATCTGATCTCCCTGCCAACGCCTTTTCCTTGCTTGCTAATTCAGCTAGCTGAAGGTCAAGATTCTGGGATCTTTGCACAACCACAGATTCCTGCTCACTGAGAGCACATTCTCTCTGATGCAGCGCATTTCTTGTCACCTCCATTGCTGCATCAAAAGACATTTGTTTGTTTGCCATCTCAGATTCAAAATCATGTTTTCTCCTCTCCAAGGCTATAGCTTGTTCCTGATTCAACCTTTCAATCTCGGCCCGTTCTTTACTTGCGATTGTCTCTTGCAAAATTAATAATTCACTCTCCCTTTTGTCAAGCAGGGATTCCTTCTGAATCAGAGCTTCCTCTCTTGAAACTATTGCCTCCATTTTCAGCTCCAACTTATATTTTTCCTCTAACAAAACCTTCCGTTCAGCTTCAAGAATATTCTTTTCTTCTTCCACTCTTTTCTCTGAGTGAGTAACATAAGCTAATCTCTCAAGGATGTTCTCGTCCCTCTGATTGAGTAGAGCTTGTTCCTTTAGTAATACTTCCTCCTTTTCATGCAAAATTTTCTTCATATCGTTCAACGATTTCCTCTGGAGGCTAATTTCCTTCTCTTTGGCCTCATTCTCGAGCTCACAAGAAATTCGGTCTCTTCTAAGCTGATCTTCGCGATCATCGATGTCATGTAAACTTCTCAGTGCTGCATTATGAGTCCGTATGGACTCTGCCTCCAAAGATTTTGCTAGAAGAAGCTTCTCTTCTGCCTCATCAAATTTCTTGTGTGCAGCCTCCATCAATTGAAGAGCTTCAGCCAATTTCGATTCATATGAAACCTTTGTTTCAGCTGTTTCCCCACGCATATCATGCAATGCTTTTTCAAGATTAGCAACACACTCCTTTTGGATGCCTAAACTCTTTTTCAGGTTTTCTTCCTTCTTCCTTGCTTCAGCTAAAGCAGACTGCTGGGCTGCACGTTCACGCTTGTGCATAATCTCAGCAGATTCCGAAGCAGCTCTAAGTTGCTCATGCTTGGATGTTAACTCCTTCCGCTCCATCAAAACAAGACCAAGATTGTGTTGGTATTGATAAATCTCGGACTCGAGCCGCGAGATGTACGCAATGAGCGCCGCCTTGTCGCGGCGCTTGAGGGACTCCTCGTCGAAGCCGGCCTCCCGGAGCTTACTCCAGATCGCGTCGTCCCCCGCGGCTGCGCCACCACTTCCTCCTCCTCCTCCGCCTCCTCCTCCCACCCCACCTGCCGACCGCGGGCTCGCCATGGCTCCTGCCCGCCGGGAACCCTAGATCTCGACGGCACGATGCGGCGGCGGCGGCGGCGACCACCCGTCGTCACGCGCCCCTCGCGCGCAGCAGTGCTTTCTTCCCGTGCGAGTAGTGGAGGTCTCCCTCCTCGCCTCCTCTCTCTCTCTCCTCTCTCTCTCCCTTCTCTCGCACACCTCTCCTTTTCCCCTCGAGCTTTTTTTCTCTCTCTTCCTTTGGGCGGCTGCTCGTGTGTGCTGCGCGAGACGGAGGTTTTTTTTATTATTATTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0039400.1 | 1 | 32327906 | G | T |
| Osa01LNT0039400.1 | 1 | 32327875 | A | C |
| Osa01LNT0039400.1 | 1 | 32328524 | A | G |
| Osa01LNT0039400.1 | 1 | 32329330 | C | T |
| Osa01LNT0039400.1 | 1 | 32331006 | G | A |
| Osa01LNT0039400.1 | 1 | 32329989 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0039400.1 | osa-miR5526 | Cleavage | 4.0 | 8.444 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR5526 | Cleavage | 5.0 | 11.496 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR5792 | Cleavage | 5.0 | 11.973 | 1 | 24 |
| Osa01LNT0039400.1 | osa-miR5793 | Translation | 4.5 | 16.766 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR5828 | Translation | 4.0 | 13.072 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR6248 | Cleavage | 5.0 | 5.88 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR395t | Translation | 4.0 | 13.982 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR395a | Translation | 4.0 | 13.982 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR395a | Translation | 5.0 | 11.381 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR1846d-3p | Translation | 4.5 | 21.642 | 1 | 20 |
| Osa01LNT0039400.1 | osa-miR1852 | Cleavage | 2.0 | 17.558 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR1855 | Translation | 4.5 | 19.99 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR1428e-5p | Cleavage | 5.0 | 21.181 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR1873 | Translation | 5.0 | 14.001 | 1 | 24 |
| Osa01LNT0039400.1 | osa-miR1428f-5p | Cleavage | 5.0 | 21.181 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR1428g-5p | Cleavage | 5.0 | 21.181 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR2118f | Translation | 4.0 | 21.092 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR2118h | Translation | 4.5 | 21.092 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR2118j | Translation | 4.0 | 21.092 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR2118k | Translation | 4.5 | 21.092 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR2118m | Translation | 4.0 | 21.092 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR2919 | Cleavage | 3.5 | 9.272 | 1 | 19 |
| Osa01LNT0039400.1 | osa-miR2919 | Cleavage | 3.5 | 10.468 | 1 | 19 |
| Osa01LNT0039400.1 | osa-miR2919 | Cleavage | 4.5 | 11.225 | 1 | 19 |
| Osa01LNT0039400.1 | osa-miR2919 | Cleavage | 4.5 | 11.339 | 1 | 19 |
| Osa01LNT0039400.1 | osa-miR2919 | Cleavage | 4.5 | 6.795 | 1 | 19 |
| Osa01LNT0039400.1 | osa-miR2919 | Cleavage | 5.0 | 13.675 | 1 | 19 |
| Osa01LNT0039400.1 | osa-miR5161 | Cleavage | 5.0 | 16.191 | 1 | 20 |
| Osa01LNT0039400.1 | osa-miR5161 | Cleavage | 4.5 | 23.621 | 1 | 20 |
| Osa01LNT0039400.1 | osa-miR5338 | Translation | 4.0 | 19.494 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR5504 | Cleavage | 5.0 | 15.836 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR5514 | Translation | 3.5 | 21.863 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR5521 | Translation | 4.5 | 17.556 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR5525 | Cleavage | 5.0 | 14.168 | 1 | 22 |
| Osa01LNT0039400.1 | osa-miR818f | Cleavage | 4.5 | 10.555 | 1 | 21 |
| Osa01LNT0039400.1 | osa-miR395t | Translation | 4.5 | 11.381 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0039400.1 | 1 | gpy1 | Others | Others | RG541 | RG101 |
| Osa01LNT0039400.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0039400.1 | 1 | An10 | Morphological trait | Panicle/flower | nan | nan |
| Osa01LNT0039400.1 | 1 | qCC-1 | Physiological trait | Source activity | RG541 | RG101 |
| Osa01LNT0039400.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0039400.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0039400.1 | 1 | qLRC-1 | Resistance or Tolerance | Drought tolerance | RM237 | RM302 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)