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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0426800.1

GCGATCGGAAGTAAACTCCAAAATATCCAACAAATCATAATAGAACTTACAACCGTTGAAAGAAATCTCTGTAGAAATAGAAAATAGTGAAATGAATGCAAAAATCAGTCTGAGATAAGAAAAAGCAACCTAGTTAGAGCAATTCATTGTCATATCATCTTAATCTAACAAAAATATACCAACCAGCAGTGTTGCTGTCTTTACTCGCAAGCACCATATTTAGTTTTGATGCAGCAGTGACCAAAGCTTCCTCGTCTTGTGATTGTGCTTGGTATGTTATAGTACCATCATTTCTTTTGATAGGAACAACTGTACTGCAAAGAGCCATCACCATGAGAAATTTGGCAATATCAGGATCGTTACGCGAAACAGCATCTAGAAATCTGGCATCTTTTAAAGCATCCCCATTGTTTTCTCCATATAGAGTATCACTCATGCAACATCTTCTGAAAATCATTATGTTTTCTGTCAGTGTTCCAGTTCTGTCACTCAAAACGTACTCAACCTGTCCAAGGTCTTCACTAATAGCTGTGTTAGCTGAATGAGCAGGCGTACATGTTTCCCGATCGAACATTTGTTCATCCCAGTCAATGAACTTTGCATATACACCTTTAGCCAGATCAAGAGTTACCATGTACTCAGTGGTGATGAAGGAGTCATTGACGGCGACAAGCTCGACATACTCGCTCTGCAACGCCAATGCCTCCCAATGCGGCCGAACCTAGACCAGCAAGTTGAAGACAACAGTGACGACGACGGCAGGTTGAGGACGGCGATGAGGGCGGCGAGGCCAGTAGCCCCTGCCATCATGGATGTCATCCGCCCAGACCGCCACCGATGTGTGCCACGACGAAGCTCGGCATCTTGAGCCTCCCCTCGATCTGCAGCACCAGGAGCAGCGGCGGCCGAAGCTGGGAGAGCGGCGGCGAAGTCGGATTCGGACGGAGGCGGTCAGAGAGAGAGAGGGAGAGGGAGAGTGAGAGGGTGAGGCGAGGAGGGGACGCGGGTGGTCAGATCCGCGTGCCCTGACCACACGGAGGCCGGATCCGAACGTCGACCGTCGGAGGCGGCCGGAGGCAGAGGTCGGCCGCGGCGACGCGAGGTGGTGGCGGAGGTCGCTCGCGACGGGCTGGGGACGGGGGCGGGGGGCGGCGACGCGAGGCGTGGACGGGGGCGGTGGTGGCCGGCGGAGGCGGCGAAGGGCAGAGAGTGGACCGACCGCGAAGGAGGATGGGAGACGGGCAGCAGCGGCTAGGGTTAGGGGTGAGTGGACCGGCGGCGAAGGAAGAGGATGGCTGAGGGAGAGGGAGGGGCGGCGGCGGGAGGGGGAGGCGGCGGCGGCGGCGGCGTGAGAGGAGAGGGAGTGCGCGGGACGACTCGACGAGAGGGAGGAGAGGCGGGTGGAGGCGGCTAGGGTTGGGAGCGGGTTACT

Coding Potentia
Explanation CPC Score
noncoding -1.28251
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0426800.1 9 1615739 C G
Osa09LNT0426800.1 9 1616231 A C
Osa09LNT0426800.1 9 1616507 A G
Osa09LNT0426800.1 9 1616939 A C
Osa09LNT0426800.1 9 1617006 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0426800.1 osa-miR5828 Cleavage 5.0 14.298 1 21
Osa09LNT0426800.1 osa-miR444b.1 Translation 2.5 17.43 1 21
Osa09LNT0426800.1 osa-miR444c.1 Translation 2.5 17.43 1 21
Osa09LNT0426800.1 osa-miR2118b Cleavage 5.0 13.803 1 22
Osa09LNT0426800.1 osa-miR2118n Cleavage 5.0 13.803 1 22
Osa09LNT0426800.1 osa-miR2924 Translation 4.5 19.332 1 21
Osa09LNT0426800.1 osa-miR2924 Cleavage 4.5 11.928 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0426800.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0426800.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0426800.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus