>Osa09LNT0426800.2

GCGATCGGAAGTAAACTCCAAAATATCCAACAAATCATAATAGAACTTACAACCGTTGAAAGAAATCTCTGTAGAAATAGAAAATAGTGAAATGAATGCAAAAATCAGTCTGAGATAAGAAAAAGCAACCTAGTTAGAGCAATTCATTGTCATATCATCTTAATCTAACAAAAATATACCAACCAGCAGTGTTGCTGTCTTTACTCGCAAGCACCATATTTAGTTTTGATGCAGCAGTGACCAAAGCTTCCTCGTCTTGTGATTGTGCTTGGTATGTTATAGTACCATCATTTCTTTTGATAGGAACAACTGTACTGCAAAGAGCCATCACCATGAGAAATTTGGCAATATCAGGATCGTTACGCGAAACAGCATCTAGAAATCTGGCATCTAATTAGAGAGGAAAAACAATCAGTTAGAGAGCAAAACAAAATATTGACCAATAAATGATATATCAATATTGATAATATAATTGAACAAATCCATGAAAAAAATTCTGTGTAGTTCCTGCAGCCTAGAAAAAGGTATCATGCAGTATAGTCTGAAAGGATGAAACAAAGATTAGTGTGTTAGATGTAATGCATGAACAATTCACCTACTTAAAAAGCACATGAGTTAATACCCAGGCACATTTATAGAAGGTAAAATCTCCAAAAAATGAGTAACCCAGGCACCTAAGGAGATGTTTGGATGATGCCTAGGGATGCCACAAGCTTAGCCAAATTGTGGCATGAAGCAAAATTGTGGCTAGAAAATAGTTGGCCACAAGTGTGGTATAGTTAGCTCTAAAACTGAGTATGACAAGTGGGACCTAAGGCTAACAAAGTGTGGCACGACACAATTGTGAGAATGAAATAAATACACACCTAAGAAACTGTGGCGTGACTAAAGTGTGGTGTCGCAAAGTGAGGGAATGAACCAAACACCCCCTTTATTATCCCTGACACCTTCACATAAGCTGAGCCAGAAACAGAAGGTTGATTGAGTTTACAATGCATTGTAAGGACTTAACTAATGGGGAGCATCCATTGTTGCTGTTTGCAAATTCCTATTTAACTCAACACTCGTGAATCAACATTTGACATGCCACTGAAAAAAGTCAGACAGTTCATGACCAGATGTGCAAACAAATAACATTGTATCACACTAAGCCCAGAGAAAAGAGAATTTCTCCTGGTAGCTAGAACATAAGTGGATAACCTTTTAAAGCATCCCCATTGTTTTCTCCATATAGAGTATCACTCATGCAACATCTTCTGAAAATCATTATGTTTTCTGTCAGTGTTCCAGTTCTGTCACTCAAAACGTACTCAACCTGTCCAAGGTCTTCACTAATAGCTGTGCTGAAAGAGACTTATGTAAGCTGTACTAAAAAATAAATAGGTTGGATGAAAAATCTAAATTCACATATATGGAAATAATATGGCACATACTTAGCTGAATGAGCAGGCGTACATGTTTCCCGATCGAACATTTGTTCATCCCAGTCAATGAACTTTGCATATACACCTTTAGCCAGATCAAGAGTTACTAACTGATTATGGATTTTCTGGCTACATGTAGTTCAGAGCCCAGCTACAACCACCTTTGCCTCCAAGGTTACAACGGATAAAGAGAGTTACAGACAGGCGTTGGAGAATAACACTATTAGTTATTACTTGTAAGGTTTTCTGCTTACCTTGTATTCTGCTATCAAACGTGAAACAGCATGATAAGCTGGATCATCTTTTCTTTCTACTACAAACAGGAATTCCAGTGCCCCCCCCCCCCCCCAACACACACACACATAAAGAGATGTGATCTGTATTATTTTTTTTGTTAATAACATATAGTATTTAACATCATGAACAACAAAGGTCATGATGAAGGCGAGGGAAGAAGGCGGTACCATGTACTCAGTGGTGATGAAGGAGTCATTGACGGCGACAAGCTCGACATACTCGCTCTGCAACGCCAATGCCTCCCAATGCGGCCGAACCTAGACCAGCAAGTTGAAGACAACAGTGACGACGACGGCAGGTTGAGGACGGCGATGAGGGCGGCGAGGCCAGTAGCCCCTGCCATCATGGATGTCATCCGCCCAGACCGCCACCGATGTGTGCCACGACGAAGCTCGGCATCTTGAGCCTCCCCTCGATCTGCAGCACCAGGAGCAGCGGCGGCCGAAGCTGGGAGAGCGGCGGCGAAGTCGGATTCGGACGGAGGCGGTCAGAGAGAGAGAGGGAGAGGGAGAGTGAGAGGGTGAGGCGAGGAGGGGACGCGGGTGGTCAGATCCGCGTGCCCTGACCACACGGAGGCCGGATCCGAACGTCGACCGTCGGAGGCGGCCGGAGGCAGAGGTCGGCCGCGGCGACGCGAGGTGGTGGCGGAGGTCGCTCGCGACGGGCTGGGGACGGGGGCGGGGGGCGGCGACGCGAGGCGTGGACGGGGGCGGTGGTGGCCGGCGGAGGCGGCGAAGGGCAGAGAGTGGACCGACCGCGAAGGAGGATGGGAGACGGGCAGCAGCGGCTAGGGTTAGGGGTGAGTGGACCGGCGGCGAAGGAAGAGGATGGCTGAGGGAGAGGGAGGGGCGGCGGCGGGAGGGGGAGGCGGCGGCGGCGGCGGCGTGAGAGGAGAGGGAGTGCGCGGGACGACTCGACGAGAGGGAGGAGAGGCGGGTGGAGGCGGCTAGGGTTGGGAGCGGGTTACT

Explanation	CPC Score
noncoding	-1.32251

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0426800.2	9	1615739	C	G
Osa09LNT0426800.2	9	1616231	A	C
Osa09LNT0426800.2	9	1616507	A	G
Osa09LNT0426800.2	9	1616939	A	C
Osa09LNT0426800.2	9	1617006	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0426800.2	osa-miR5794	Translation	5.0	15.326	1	21
Osa09LNT0426800.2	osa-miR5828	Cleavage	5.0	14.298	1	21
Osa09LNT0426800.2	osa-miR6256	Cleavage	5.0	19.28	1	22
Osa09LNT0426800.2	osa-miR167h-3p	Cleavage	4.5	16.73	1	21
Osa09LNT0426800.2	osa-miR1429-5p	Cleavage	5.0	14.794	1	21
Osa09LNT0426800.2	osa-miR444b.1	Translation	2.5	17.43	1	21
Osa09LNT0426800.2	osa-miR444c.1	Translation	2.5	17.43	1	21
Osa09LNT0426800.2	osa-miR2118b	Cleavage	5.0	13.803	1	22
Osa09LNT0426800.2	osa-miR2118n	Cleavage	5.0	13.803	1	22
Osa09LNT0426800.2	osa-miR2924	Translation	4.5	19.332	1	21
Osa09LNT0426800.2	osa-miR2924	Cleavage	4.5	11.928	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0426800.2	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0426800.2	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0426800.2	9	nan	Morphological trait	Root	C711	G103

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus