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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0426900.1

CTCCATTCAGTAACTGCAATGAGATAGATATCTCTTCATGCGCATATCTGTTCTGTTCAAATAATGCATCATAACAGAATCTGGAATGGTTCATCTCCCTACACAGAATGCAGCAAGACCAGAATGTACATGGTAAGAGCACAGCATTGCAGCAAAAATTGCACACTATTGCTGACTCCTAAATGCTTAGCTAGGGGGAGGTTCAGCTACACCAAAAGGGTTGCAACAGATCACACGATAAACTGCTGGGTGAAACCATCAACATGAAGCAGACTCTAATACTGAAAAAATAGCTGTTCCACCCGGAACTAAAAACCCAAAACACGGTCATTGTTGCTTTGGCTCCTAAACAATACTGAATTCTTTAGAGCAGCAGCAATAAGATGTACGCCACGAAATTCAGTCTTGATTGTCACGAAGATTGACTTCAATAACATGTAGCTGAAGAGTAATTGTTCTGCCAAGGTGGATGAAGAGCGATACTGCTGCTGCTACTTTCCTGACACTTCAGCAGATTTCCCCTAATCATCACCTTCACACAGATCAGCAAGCATATCAATAGTTAGTTCTGTATCAAAATCATGGGCCCTCAGTGCTTCAACAATGAAGTCAGCAGACACATCTGGGAACATCTTCGAGAGAGATTCTACCACAGCAAGATGATTATCAACACCATTTTCCTCGTAGTGCGATGGATCAAGCGCGGTACTAGCAGCTCCTTTTGATGAAGATTCTGCAGAAATGTTGAGCTTTCCTAGGCTTTCACCATAGTCGTCCAAAGAAAGGGAATCTGGGAGCTCATATTCAGAAGACTTGTCAGCAGTCTCATCCTTTTCTGAATCACCTACTTGCTTCTCAGAGGCCTTCCTTCCGCTCAAGCTTTCTTCAAACGAAGACCTTGGGGGAGGCACAAAGGGAGTGGCATTTGGATTCAACTGAGAAGACCGCTCCATTGTTTGCGCTCCAGTAGACCTTGTCGTCGCCGGCGGCGGTGGGGGAGGAGGAGAAGGAGGAGGAAGGCGCGACGAAACCCTAGTCGCCGCGGCTCGCCTCGCGCTGGGTTGCCTCGTCGTCGGGGAG

Coding Potentia
Explanation CPC Score
noncoding -1.21544
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0426900.1 9 1917484 T G
Osa09LNT0426900.1 9 1917798 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0426900.1 osa-miR5832 Cleavage 3.5 15.988 1 21
Osa09LNT0426900.1 osa-miR159f Cleavage 5.0 24.112 1 21
Osa09LNT0426900.1 osa-miR2093-5p Translation 4.0 20.455 1 20
Osa09LNT0426900.1 osa-miR5505 Cleavage 4.5 18.508 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0426900.1 9 nan Morphological trait Root C711 G103
Osa09LNT0426900.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0426900.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus