>Osa09LNT0427200.2

CGACGAGAATATGTACCGGATGCATTTGCCCTATCGAACTAAAGAAGCTTACTATACAATCTACAGTTATCCTATCTATTTATGTACAAAAAAAAGTAAGAAGAAAAGGGGTCAAGACATTTCCCGGCAAAAATTTCTACAAGCAAGAGTTCTCAAGCCAATATGTACCCCAATAGAATAACACTCCAACTCCAGAGTTGCTCCGTCAGATCACTCACAAGAAGTGAGGAAATGATGAGATGCGAGGCAGGTGCGTCAGGAGATCCCCAAACGATTCTTGCCTCGGCGGCAATGAGGTGTTGCTTCCACTGTCTGCTGACACCGGAAGCGCATAAGGTTGGGGCTTCCTTTCTTGCATCTCATTGTCACCATGAATGCTGCTGCTGGGGTTTGTCTGGCCTGAACCTGAATCTCTCTGAATCAGGCTGCAGAGGGAGTTGACCCTTGACATGAGCATCCTTTCATCAGCTGCGTTGGTTATCTGGGAATCATTGAGGAGTTGTCTGGTAAGCTCATCAAATGTCAGTTTACCCATTGAGCCATCGCCATCGCCATCGCCGATGATCTGGGTGCTGCCCAAGAGGAATCGGGTTATTCCATCTAATGTTACTTTACTTGACGTGGAATCCCCACGATGAACTGCAGGTAGGTTCCCTGAATACATCTGTCTGTAGATATGATTCCCAATGTGATTTGCAATCTCACTTTTGGACATGGAGCGCCTTATCCCCGGTACCTTGATACCGTTCCAATTATAGATGCTTTCTTGCCGTTCACAATCACCAGAAGCAGCATCTTGTTTAATCACTTGAGTACCACTAACTGAACAAGGGAAATGTTGAAGTAACTTGTCCGGTGTTCCTGAGAGCTGTCTGGCTTCAGTATCTATCCTACCTGATGCAGAATGAGGCGGTAACAGTTCTGTAAATCTTTGGGGAGCTAACTGATCGCCATCATCTTTATGCTCAAAATCTTGGCCTTTTATGCCCTCTGCATCTTCAAATATAGAAGACTTTGATTCAAAGTACGGATTATCCAAATTGATGTCGTTCTGCTGGCTTAGTGAATATAGACGTGGGTCACAATGAACAAGCTTCTCAACATGCTTATTCATCATTCCTGGCGGGCACTGAAGAAAATGCCTCCTGTGAATGCTTGCTTGTCCACCAGTGAAATCAGATGTTGCCTGCCATAAAGTGTGTTTCCTTGGCTGTGGATTAGTTTCTCGAAAGAAAAGTGGCTGCCGGGACAATGCGATCTCCAAGATCCCAGGTTCATTTTCTGGAGAAACCACCTTCATGGCACAGATGTCAGACCACTGTATCTCAATCTTGCTCTTCAGACCACCATCCAGTACTTCCCACACAAGTTTATGCTTAGCAAAATAGCATTTTGCAACCAGATCGCCTTCATACCTTGACACCCACTCCCAAGATCCAATTCTTAGAACAGAACCAGGGAAATTGGAAGCCTTCAATTTCTCTGAGGCACTAGCGGTTCCACTATGCTGGACATCTTTGGCCTTACCAGCCTGCACAAGCTTCATTTGGATCAAATCCACCAGAGAGGGGCTCTTCTTCAGCCGCAAGCCCAATGGGCTAGGCTCATCAAGGAAACCATGTTGGGATGACTGTTGATTGGACACACTACCACCGTCTGTGCTCCAGTGCTGTAGAGCAAGGCGGGACCTCTTGTGGAACGGCGACGCCTCTGCCTGTGCCGCCGCGTCGCCGTCGTCCAGCGCCTCCTCCTTGACATCCCGCCGCAGCTTCCCCTGGTGCGGCAGATGAACCATCGTCTCTCCGCCGCCGGCGTCGTTACTTGTTTCCCAACCAGAAGGGCAAAAGAGAAGGAACAGAGGAGAAAATACTCTCTTCTTGTT

Explanation	CPC Score
noncoding	-1.21175

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0427200.2	9	2182124	A	G
Osa09LNT0427200.2	9	2183945	G	A
Osa09LNT0427200.2	9	2184983	C	G
Osa09LNT0427200.2	9	2185295	A	G
Osa09LNT0427200.2	9	2185299	G	A
Osa09LNT0427200.2	9	2185615	C	G
Osa09LNT0427200.2	9	2187130	C	G
Osa09LNT0427200.2	9	2187033	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0427200.2	osa-miR5793	Cleavage	5.0	13.624	1	21
Osa09LNT0427200.2	osa-miR413	Translation	4.0	19.513	1	21
Osa09LNT0427200.2	osa-miR1857-5p	Cleavage	3.5	18.01	1	21
Osa09LNT0427200.2	osa-miR1857-5p	Translation	5.0	13.136	1	21
Osa09LNT0427200.2	osa-miR5510	Cleavage	5.0	18.172	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0427200.2	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0427200.2	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0427200.2	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus