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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0427400.1

GCCGCCACCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGAAGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAAATTTGTCGCAAGGTAGTGCTCCTCCACTGCAAAGGAAATTTCTCTTTAGTCCCTAGAAGTATAAGATTCAAATAGAATTTGATTCGATAGCTGCTCGTGCAATTTTTGTGGTGCTTGAATATAGGCTGAAACCGTATTTTCAAATATGGTATTAAACCATCAGGAATCAGGTTAGTTGTCCTAAATAAAGTTTGTAGTCATCGTTGATATCTTTCTAACGGCACTGGTTTCACTCAATTCCGATAAACGGTTTGGGAGAAACAAAAAAAACAGTACTTCTGACCGGGTCCGGAAATCAGGACAGCGATTCGTTTTTCTTAATCTGGGATTTACAGAGGCATAATCTGATTTTCCTCCCAACATGAAAGTTGTAGAGAATTTTGTCTAGATGTCCAAAGTTATATTATTTGCTAGATTCCGTTAGACGGTTTGCGAGTTACGCATAAAATAGTAAGGGAACTGCTATAGGTTATTTAATACAAATCGGTAAAAAAGTCTATATGTTCGAGGTTATCGATTTTAGTAAATATCCCTTATAACTGCCTGTCGTGGATATCCGTATTTTTAGGGGAGACTCTGCCGAAATTTCTAATAATTTTGGGACTTAATTTTTGACTGTATTTTGGTGTGGCATTCTAGGTATGTGGTTACCTGGGGTGTTACAGTTGGTATCTAAGCGGGCAGTAGGTCCATGGTAAGTGACTGGGTAATGTAAATATAAATCAACATAAAATTTTGAACGAGAGTTCCTAACCAATTAAAAAAAATTTCTCTTAGGATAGAAAATAGTAAGAGTATAACTTGGGTTAGATACAAACATCTAAAACTTGACACACTGGTGCACAATAGGATGGGGTGCATGGGTCATTCCTAGCATTTATGTTTTTTCTACATATATATGTGTATGATTGTGTTTCTTTGCATGCTATTGTCTAACCTATTGTTAAACTAATGACGTGTAAATGCTTGTGTTTGATATAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTAGAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACGTTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGTTAAATGCCGATTCTATACCGCCAACATCTGCATAAAGTTCGGATAATAAAACATCCAACATAGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGATGGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCGTTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAGTTCAGACATTACCCCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCCTCATTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCT

Coding Potentia
Explanation CPC Score
noncoding -1.22638
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0427400.1 9 2320661 A G
Osa09LNT0427400.1 9 2321677 G A
Osa09LNT0427400.1 9 2321686 A G
Osa09LNT0427400.1 9 2321716 G A
Osa09LNT0427400.1 9 2322644 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0427400.1 osa-miR1854-3p Translation 5.0 19.202 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0427400.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0427400.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0427400.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus