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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0428000.2

GTTGAAACCAATTTACAATGCGATTTTATATTCAAAGTTTTGAAATAACATACATCAATTTGATTTGTCAATAGCAGCATGAAAGCATAATACAACGCCACTAATTTATAACCTCAAACGCCAAACATGACCATTTCAACACCACCTTTAAATGTTGGGATTAATTGCAAATAAGAAATACACAAGTTATATGGGCTCCAAACTGGGTACATCCCGTCAATCAACTGGCATGTTCTGTACAACCAACCGTTCAAATCTTACCAAACTCTTTTGTTGAGCAGAAGTATAACTTCTGGCAGAGCAATGAAGATACTCTACGAATCAAAACGCTCTCACATCACCTGAACAGGATAGTCAAAGGAATTCTGCTCAAGGCAAAGAAGACAGTAGTCTTATACTGAAGCAATTATTGTATTGAAGATCATCAACTAATCTTATGACATCAATTATCCCCCATCAACAAAAGAAATAACGCATATTTTATCCCCCATCAACAAAAGAAATAAACGCCAAGTACTTAATGGCAGTACCTATCTCATGACATCAATATAGCAAAACAAATTTGCAGATAAATTCCCAGTGCGATTTGATGTGTGGCAATAAAATATAGGCCATGACTCAGGTTAGTGACAGATCAAAGGCCCCTAGCATAATTGAACATGAGATAAATACACATCTTATGCCACTGAGACAAATTAACAGAGATAAAGCTTCATATCACAAACCAAGCTGCGATTCCAGGCAAGAACAGGGAGAGTAAAATAATATGGATTTTTACTGCCGACCGAGTAAGAAGGTACATGAACCCCACCTGAGAGGAGAGGTCAGTCACGGTGATGATGGCAGCGGCGGCGACGCCGTTGGTTAGCATGAGCCGCCTCGGCGCTATATTTATAAACACATTTCTTATGTCTCTGAGAGAAGAGGTCGGTGATGGTGATGATGACGGCAGCGGCGACACCGTTGGTCAGCACGAGCCGTCTCGGCACTGACCCTGAACCCACTGAGCGATGACCCTGAACCCACCGTTCACTTGCTCGCTCTAAGACGATGACGACGCTTGCTTGAACGACGGTTGTGTGTGGCGAAGGTGCTGTACAGTCTTAAATGAAGCTTAATCGCTCAATCCATGCCTTGCTGCTATCTTGTTATCAGTTTATCACCTGCTAACTAATAGTATGATATATTACCAATGTGCAGTTAGTGCCATTAAACAAGGCCCCCTTTTTTTTCTTCTTACATTCTAGATAAATAGCCGCTAAACAATTATATAAGGGGTGTTTAGCTGAGATCAATGGCGATTATTAGAATTAAGGTTCTTGTATTGATCAGTTGAAAACTGAAGACTACGTATCAATAATCAAAAGTTGGATTGTACTGCACTGATCTCTGATGAACTCAACATAGCAGCTCTGAGTCCTTTTTGTTCAGATTAAAGGAAGGAATCCACAAAGAAGCACTGGGCGATTGCCTCCTTGCTGATTGCGGTGGTCATTAGCATTCCACAAAATTTCCTGCGGGATCCAGCGCGAGATGCTCCAAGGCGAGCAAGGCAAGGAGGCAGGGCATCGCGGAATCGATCTGGCGAGGGCACAGGGTGAGGCGGCGGCGGCGACCGGTTGAGGCAGCGCGGTTAGGGTTGAGGGGACCTGGGGGGCGGATGGATGGCGAGGGGGAGGCTGACGAAGGGGACAATGGCGACGCGAT

Coding Potentia
Explanation CPC Score
noncoding -1.16514
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0428000.2 9 2641881 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0428000.2 osa-miR5837.2 Translation 5.0 14.03 1 21
Osa09LNT0428000.2 osa-miR171c-5p Cleavage 4.5 14.632 1 21
Osa09LNT0428000.2 osa-miR414 Cleavage 3.5 24.195 1 21
Osa09LNT0428000.2 osa-miR1847.2 Translation 4.5 17.72 1 24
Osa09LNT0428000.2 osa-miR1849 Translation 4.5 9.27 1 21
Osa09LNT0428000.2 osa-miR1851 Translation 4.5 13.084 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0428000.2 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0428000.2 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0428000.2 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus