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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0428300.1

ATAAAATTTCTCGTAGTAACCAACTTACTATTACACTGATGGTTCTCAACATTGTCTCTTAGTAACTAAATTACACTGATGGTTCTCAACATAACATATTAATCTTGTCACAAAATTTCTCTTAGTAACCAAGTCACTATTACATATTAGAGCAAAATCTTACTAAACTACAGTACCTCTGTTTCAGTGTTCATGCTTCTTACAATCCATTTGAAGAAAAGCCAATTGAAAGAAATATATATATACAGGAGTTAACATCAAGTCTATTTTTCACAAACAATGTCGTCGCACTTTCTCTCTCTTGCTTCATGCTATAGAAATTCCTCGTGCTGAAGATTGCAGCATCTTCTCAAATCCTCCAACCAGTACAATTTTCATATTTAGTTGGAGAATCACGAAAGGGTTAAGTATAATCAACCATAAACCTCAGCTCGGGTGCTCCTCAATCCATCCGGTGACAGAGTAGCAGCTAGCTGCAGCCGATGTCGTCGGATTGGTGTGGATGGAAGGTGCTCGATCTGTGTCGTCGACCCCGCCGCTGCCAGCTGTGTTGAGCCACCTGTGAGGATCTTCCTACCGTATCTAATTTGGAAAACGGCCACTACAGCCGTACATGCATGGGACACAAACCGATGACATCTAAGAGCATCAAAGAAATTAGTCTCTCTTGGGGTCTAATCATTCAACTTGTGTCTGCATCCTGTTCTCGGTGGGGAACTGTGGAAGGTAGATGCCGGATCTGGCTCATCTCGATAGCGGCACCGATTCTACCATGGCTAGCAGAAGCCGACATGGGAGGAAACTCGCGGGAGAGGGGAAGTTGAAGATCGGCGACGGCACTCCACCTGACTCCATCGACAAATCCACCAGATCCACTGACTCCTCACCGCTGCCGCTAGCGAGAACAGATCCAGGACGCCGCTGCCTCCTTCCTGTAGCCCGCCATCACCACCGCACACTGGCCAGCCGTTCCCAGATCCACAAAAATCGGATACAAGGCCGGGATGGGGGTGGGGGGTGGGCC

Coding Potentia
Explanation CPC Score
noncoding -1.24617
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0428300.1 9 2923251 G C
Osa09LNT0428300.1 9 2923288 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0428300.1 osa-miR1846d-5p Translation 4.0 23.585 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0428300.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0428300.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0428300.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0428300.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus